Browse Element(s) Details


Os.7869.1.S1_at

Description gb:AK069903.1
DB_XREF= gi:32979927
TID=Os.7869.1
CNT=109
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.7869 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative GTP-binding protein (P0406H10.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023036J02, full insert sequence.
FL= gb:AK069903.1 gb:AK059888.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0845011/11GTP-binding protein YPTM2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g08420Os.980.1.S1_a_at10/111+4130505..4137434expressed protein
LOC_Os01g08430Os.17699.2.S1_x_at11/111+4140153..4147215expressed protein
LOC_Os01g08430Os.17699.1.S1_at11/111+4140153..4147215expressed protein
LOC_Os01g08440Os.8045.1.S1_at11/111+4149879..4151471Indole-3-acetate beta-glucosyltransferase, putative, expressed
LOC_Os01g08440OsAffx.9021.1.S1_x_at1/111+4149879..4151471Indole-3-acetate beta-glucosyltransferase, putative, expressed
LOC_Os01g08450Os.7869.1.S1_at11/111+4157347..4161166GTP-binding protein YPTM2, putative, expressed
LOC_Os01g08450Os.7869.1.S1_x_at11/111+4157347..4161166GTP-binding protein YPTM2, putative, expressed
LOC_Os01g08450OsAffx.24709.1.S1_x_at3/111+4157347..4161166GTP-binding protein YPTM2, putative, expressed
LOC_Os01g08460Os.27659.1.S1_x_at11/111+4163989..4170191TMS membrane family protein, putative, expressed
LOC_Os01g08460OsAffx.10965.1.S1_at11/111+4163989..4170191TMS membrane family protein, putative, expressed
LOC_Os01g08460Os.46982.1.A1_at7/111+4163989..4170191TMS membrane family protein, putative, expressed
LOC_Os01g08460Os.36817.1.S1_at1/111+4163989..4170191TMS membrane family protein, putative, expressed
LOC_Os01g08470Os.8113.1.S1_at11/111+4175962..4178214transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g08470Os.8113.2.S1_x_at11/111+4175962..4178214transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g08480NANA1+4184295..4188517retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0006888biological_processER to Golgi vesicle-mediated transport
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7869.1.S1_at--485--2151Chr01:4157445..4157469 (25 bp)
ACAGCGGACTGATTACAACAATTTT
LOC_Os01g08450
Os.7869.1.S1_at--604--1611Chr01:4157443..4157467 (25 bp)
AGCGGACTGATTACAACAATTTTAC
LOC_Os01g08450
Os.7869.1.S1_at--1115--3251Chr01:4157430..4157454 (25 bp)
CAACAATTTTACAACTTGTCACAGG
LOC_Os01g08450
Os.7869.1.S1_at--360--3611Chr01:4157416..4157440 (25 bp)
CTTGTCACAGGTGTTGGAAAGTTAA
LOC_Os01g08450
Os.7869.1.S1_at--1129--8111Chr01:4157401..4157425 (25 bp)
GGAAAGTTAATTTTGCATCGGTAGA
LOC_Os01g08450
Os.7869.1.S1_at--1101--6751Chr01:4157396..4157420 (25 bp)
GTTAATTTTGCATCGGTAGAAAGAC
LOC_Os01g08450
Os.7869.1.S1_at--829--10731Chr01:4157389..4157413 (25 bp)
TTGCATCGGTAGAAAGACTATATCT
LOC_Os01g08450
Os.7869.1.S1_at--1028--2751Chr01:4157376..4157400 (25 bp)
AAGACTATATCTTTCATTGAGTGAT
LOC_Os01g08450
Os.7869.1.S1_at--637--9551Chr01:4157367..4157391 (25 bp)
TCTTTCATTGAGTGATTAGGTCCAA
LOC_Os01g08450
Os.7869.1.S1_at--963--6111Chr01:4157358..4157382 (25 bp)
GAGTGATTAGGTCCAATTATTTTGT
LOC_Os01g08450
Os.7869.1.S1_at--266--8831Chr01:4157355..4157379 (25 bp)
TGATTAGGTCCAATTATTTTGTTCC
LOC_Os01g08450
Target Sequence 
ACAGCGGACTGATTACAACAATTTTACAACTTGTCACAGGTGTTGGAAAGTTAATTTTGCATCGGTAGAAAGACTATATC
TTTCATTGAGTGATTAGGTCCAATTATTTTGTTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7869.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis