Browse Element(s) Details


Os.46982.1.A1_at

Description gb:CB682270
DB_XREF= gi:29685995
DB_XREF=OSJNEf09G11.r
CLONE=OSJNEf09G11
TID=Os.46982.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.46982 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0406H10.19 (P0406H10.19), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g084607/11TMS membrane family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g08430Os.17699.2.S1_x_at11/111+4140153..4147215expressed protein
LOC_Os01g08430Os.17699.1.S1_at11/111+4140153..4147215expressed protein
LOC_Os01g08440Os.8045.1.S1_at11/111+4149879..4151471Indole-3-acetate beta-glucosyltransferase, putative, expressed
LOC_Os01g08440OsAffx.9021.1.S1_x_at1/111+4149879..4151471Indole-3-acetate beta-glucosyltransferase, putative, expressed
LOC_Os01g08450Os.7869.1.S1_at11/111+4157347..4161166GTP-binding protein YPTM2, putative, expressed
LOC_Os01g08450Os.7869.1.S1_x_at11/111+4157347..4161166GTP-binding protein YPTM2, putative, expressed
LOC_Os01g08450OsAffx.24709.1.S1_x_at3/111+4157347..4161166GTP-binding protein YPTM2, putative, expressed
LOC_Os01g08460Os.27659.1.S1_x_at11/111+4163989..4170191TMS membrane family protein, putative, expressed
LOC_Os01g08460OsAffx.10965.1.S1_at11/111+4163989..4170191TMS membrane family protein, putative, expressed
LOC_Os01g08460Os.46982.1.A1_at7/111+4163989..4170191TMS membrane family protein, putative, expressed
LOC_Os01g08460Os.36817.1.S1_at1/111+4163989..4170191TMS membrane family protein, putative, expressed
LOC_Os01g08470Os.8113.1.S1_at11/111+4175962..4178214transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g08470Os.8113.2.S1_x_at11/111+4175962..4178214transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g08480NANA1+4184295..4188517retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g08490OsAffx.20858.5.S1_x_at11/111+4193739..4195635hypothetical protein
LOC_Os01g08490OsAffx.20858.1.S1_x_at5/111+4193739..4195635hypothetical protein
LOC_Os01g08490OsAffx.20858.4.S1_x_at3/111+4193739..4195635hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46982.1.A1_at--938--2851Chr01:4165520..4165544 (25 bp)
AAGTGCCTCCAGGTCTGTCACTTAA
LOC_Os01g08460
Os.46982.1.A1_at--55--7811Chr01:4165509..4165533 (25 bp)
GGTCTGTCACTTAACTGAACTCATC
LOC_Os01g08460
Os.46982.1.A1_at--367--5471Chr01:4165493..4165517 (25 bp)
GAACTCATCAGTGATCAGGGTTATG
LOC_Os01g08460
Os.46982.1.A1_at--688--3471Chr01:4165478..4165502 (25 bp)
CAGGGTTATGATCATATCGCCATTG
LOC_Os01g08460
Os.46982.1.A1_at--857--6431Chr01:4165469..4165493 (25 bp)
GATCATATCGCCATTGATGCTGAAA
LOC_Os01g08460
Os.46982.1.A1_at--1130--611Chr01:4165453..4165477 (25 bp)
ATGCTGAAATTGCTCGAGAATCTGC
LOC_Os01g08460
Os.46982.1.A1_at--1149--5591Chr01:4165448..4165472 (25 bp)
GAAATTGCTCGAGAATCTGCAGTTC
LOC_Os01g08460
Os.46982.1.A1_at--348--4891NONE
GCTTATCGCCAGTGGGCACATGACC
NONE
Os.46982.1.A1_at--1138--7091NONE
GTCAGCGACAAACCCGTATGTAGTT
NONE
Os.46982.1.A1_at--739--4191NONE
CCCGTATGTAGTTGCAGGGTGCATG
NONE
Os.46982.1.A1_at--268--3471NONE
CAGGGTGCATGATCCGGGAGATGTT
NONE
Target Sequence 
AAGTGCCTCCAGGTCTGTCACTTAACTGAACTCATCAGTGATCAGGGTTATGATCATATCGCCATTGATGCTGAAATTGC
TCGAGAATCTGCAGTTCAAGAAGGCCGAGAGCGAGCAGCCCGAGGACGACGACATCCCGTACGGGTTCGGCTTCTTCCAC
TTCGTGTTCGCCATGGGCGCCATGTACTTCGCTATGCTCTTCGTCGGCTGGAACGCCAATCAAACCATGGAGAAGTGGAC
GATCGATGTCGGGTGGGCGAGCACCTGGGTCCGGGTTGTCAACGAATGGCTCGCGGCGATCGTGTATANATGGATGGTGA
TTGCTCCAATTGTTTGGAAGGGAGGGCAGGTCGGCTTATCGCCAGTGGGCACATGACCCAAGGAGAACAAATCAGAATTC
AGAAATGGAGCTTCGTCAGATGATGCAGCGATAAATACTTGGTCAGCGACAAACCCGTATGTAGTTGCAGGGTGCATGAT
CCGGGAGATGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46982.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis