Browse Element(s) Details


Os.27659.1.S1_x_at

Description gb:AK069734.1
DB_XREF= gi:32979758
TID=Os.27659.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.27659 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0406H10.18 (P0406H10.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023033E12, full insert sequence.
FL= gb:AK069734.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0846011/11TMS membrane family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g08430Os.17699.2.S1_x_at11/111+4140153..4147215expressed protein
LOC_Os01g08430Os.17699.1.S1_at11/111+4140153..4147215expressed protein
LOC_Os01g08440Os.8045.1.S1_at11/111+4149879..4151471Indole-3-acetate beta-glucosyltransferase, putative, expressed
LOC_Os01g08440OsAffx.9021.1.S1_x_at1/111+4149879..4151471Indole-3-acetate beta-glucosyltransferase, putative, expressed
LOC_Os01g08450Os.7869.1.S1_at11/111+4157347..4161166GTP-binding protein YPTM2, putative, expressed
LOC_Os01g08450Os.7869.1.S1_x_at11/111+4157347..4161166GTP-binding protein YPTM2, putative, expressed
LOC_Os01g08450OsAffx.24709.1.S1_x_at3/111+4157347..4161166GTP-binding protein YPTM2, putative, expressed
LOC_Os01g08460Os.27659.1.S1_x_at11/111+4163989..4170191TMS membrane family protein, putative, expressed
LOC_Os01g08460OsAffx.10965.1.S1_at11/111+4163989..4170191TMS membrane family protein, putative, expressed
LOC_Os01g08460Os.46982.1.A1_at7/111+4163989..4170191TMS membrane family protein, putative, expressed
LOC_Os01g08460Os.36817.1.S1_at1/111+4163989..4170191TMS membrane family protein, putative, expressed
LOC_Os01g08470Os.8113.1.S1_at11/111+4175962..4178214transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g08470Os.8113.2.S1_x_at11/111+4175962..4178214transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g08480NANA1+4184295..4188517retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g08490OsAffx.20858.5.S1_x_at11/111+4193739..4195635hypothetical protein
LOC_Os01g08490OsAffx.20858.1.S1_x_at5/111+4193739..4195635hypothetical protein
LOC_Os01g08490OsAffx.20858.4.S1_x_at3/111+4193739..4195635hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27659.1.S1_x_at--582--2471Chr01:4164569..4164593 (25 bp)
AACACGTACGTAGCTGCAGGCTGCA
LOC_Os01g08460
Os.27659.1.S1_x_at--612--2491Chr01:4164516..4164540 (25 bp)
AACAGTTTTGCTTTCGTTGCAGCTG
LOC_Os01g08460
Os.27659.1.S1_x_at--935--652Chr01:4164477..4164501 (25 bp)
ATGCAATTGGCATCCATTGCCCATA
LOC_Os01g08460
Os.27659.1.S1_x_at--649--212Chr01:4164424..4164448 (25 bp)
ATTTGTATGTTCAGTTTCCTCTCCT
LOC_Os01g08460
Os.27659.1.S1_x_at--1--3452Chr01:4164413..4164437 (25 bp)
CAGTTTCCTCTCCTGTTACTGGAGA
LOC_Os01g08460
Os.27659.1.S1_x_at--666--6132Chr01:4164390..4164414 (25 bp)
GAGGGCAATGCATCGAATCAGCAAA
LOC_Os01g08460
Os.27659.1.S1_x_at--586--2991Chr01:4164354..4164378 (25 bp)
AATGACAAACTGCTGCTGAACATGC
LOC_Os01g08460
Os.27659.1.S1_x_at--1071--5151Chr01:4164319..4164343 (25 bp)
GCAACCCTTGGAATATACGCAGACT
LOC_Os01g08460
Os.27659.1.S1_x_at--1083--5531Chr01:4164245..4164269 (25 bp)
GAAACTGGGTACTCATTGCCTATCT
LOC_Os01g08460
Os.27659.1.S1_x_at--934--511Chr01:4164089..4164113 (25 bp)
ATCGATTCTGATCAGGTCGGCCAGG
LOC_Os01g08460
Os.27659.1.S1_x_at--732--1411Chr01:4164056..4164080 (25 bp)
AGAAATGATTTACTCCCTCACTTCC
LOC_Os01g08460
Target Sequence 
AACACGTACGTAGCTGCAGGCTGCATGATCAGGGAGATGTACAGGATGAGAAGAACAGTTTTGCTTTCGTTGCAGCTGCT
GCAGAGAGGCATATGCAATTGGCATCCATTGCCCATACGANTGTAGCTAGCTAGCTAAGCTAGATATTTGTATGTTCAGT
TTCCTCTCCTGTTACTGGAGAGGGCAATGCATCGAATCAGCAAAGCATATTGTCAAATGACAAACTGCTGCTGAACATGC
AAAAGGGGCAGCAACCCTTGGAATATACGCAGACTTCCNGANACAGTGACTAATTTCTGTCATTTGGAATTTCAGTTCTG
ATCTGAAACTGGGTACTCATTGCCTATCTCTCTCTCTCTCATGATTCAATATTTATGTNGGGTACTCCTATGATGTNATC
TGATCAGGTTACAAAGCTTGAAGAAATCTTGTTTGANTGAGANGGTGACTGANATCTCTCNTGTGATGCATGCNTCTGAT
CGATTCTGATCAGGTCGGCCAGGGACATGAAAGAAATGATTTACTCCCTCACTTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27659.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis