Browse Element(s) Details


Os.8113.1.S1_at

Description gb:AK103199.1
DB_XREF= gi:32988408
TID=Os.8113.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.8113 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative extensin-like protein (P0406H10.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033122A11, full insert sequence.
FL= gb:AK103199.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0847011/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g08440Os.8045.1.S1_at11/111+4149879..4151471Indole-3-acetate beta-glucosyltransferase, putative, expressed
LOC_Os01g08440OsAffx.9021.1.S1_x_at1/111+4149879..4151471Indole-3-acetate beta-glucosyltransferase, putative, expressed
LOC_Os01g08450Os.7869.1.S1_at11/111+4157347..4161166GTP-binding protein YPTM2, putative, expressed
LOC_Os01g08450Os.7869.1.S1_x_at11/111+4157347..4161166GTP-binding protein YPTM2, putative, expressed
LOC_Os01g08450OsAffx.24709.1.S1_x_at3/111+4157347..4161166GTP-binding protein YPTM2, putative, expressed
LOC_Os01g08460Os.27659.1.S1_x_at11/111+4163989..4170191TMS membrane family protein, putative, expressed
LOC_Os01g08460OsAffx.10965.1.S1_at11/111+4163989..4170191TMS membrane family protein, putative, expressed
LOC_Os01g08460Os.46982.1.A1_at7/111+4163989..4170191TMS membrane family protein, putative, expressed
LOC_Os01g08460Os.36817.1.S1_at1/111+4163989..4170191TMS membrane family protein, putative, expressed
LOC_Os01g08470Os.8113.1.S1_at11/111+4175962..4178214transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g08470Os.8113.2.S1_x_at11/111+4175962..4178214transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g08480NANA1+4184295..4188517retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g08490OsAffx.20858.5.S1_x_at11/111+4193739..4195635hypothetical protein
LOC_Os01g08490OsAffx.20858.1.S1_x_at5/111+4193739..4195635hypothetical protein
LOC_Os01g08490OsAffx.20858.4.S1_x_at3/111+4193739..4195635hypothetical protein
LOC_Os01g08500Os.11575.2.S1_a_at11/111+4196215..4198118transposon protein, putative, Pong sub-class
LOC_Os01g08500Os.11575.4.S1_x_at11/111+4196215..4198118transposon protein, putative, Pong sub-class
LOC_Os01g08500Os.11575.3.S1_x_at8/111+4196215..4198118transposon protein, putative, Pong sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8113.1.S1_at--517--5331Chr01:4176447..4176471 (25 bp)
GAAGTCGCACACAAGTATACGTGGT
LOC_Os01g08470
Os.8113.1.S1_at--695--6891Chr01:4176433..4176457 (25 bp)
GTATACGTGGTCATTATCGTTCTTA
LOC_Os01g08470
Os.8113.1.S1_at--92--7511Chr01:4176427..4176451 (25 bp)
GTGGTCATTATCGTTCTTATTAGCT
LOC_Os01g08470
Os.8113.1.S1_at--417--6731Chr01:4176415..4176439 (25 bp)
GTTCTTATTAGCTACTAGTGTTCTT
LOC_Os01g08470
Os.8113.1.S1_at--1037--6591Chr01:4176223..4176247 (25 bp)
GATTGATGGCTAATTGGGTTGTGAA
LOC_Os01g08470
Os.8113.1.S1_at--1027--5951Chr01:4176120..4176144 (25 bp)
GAGAATCATGAGTTCAGTTCAGTTA
LOC_Os01g08470
Os.8113.1.S1_at--268--1011Chr01:4176059..4176083 (25 bp)
AGGATTCTGTGTCATTTCTTCCTGC
LOC_Os01g08470
Os.8113.1.S1_at--1140--9691Chr01:4176030..4176054 (25 bp)
TCACAATTACTTCTGGCTATTCAAT
LOC_Os01g08470
Os.8113.1.S1_at--746--2051Chr01:4176022..4176046 (25 bp)
ACTTCTGGCTATTCAATTCTTATTA
LOC_Os01g08470
Os.8113.1.S1_at--587--7931Chr01:4175986..4176010 (25 bp)
GGATTCTTGAGAGTTGTTCTTCTTA
LOC_Os01g08470
Os.8113.1.S1_at--886--6051Chr01:4175976..4176000 (25 bp)
GAGTTGTTCTTCTTATGTGTTGGAT
LOC_Os01g08470
Target Sequence 
GAAGTCGCACACAAGTATACGTGGTCATTATCGTTCTTATTAGCTACTAGTGTTCTTGGTTGGTTGATTGATGACTACCG
GCGTGAAGAGCGTAGTAAGGTGCACAAAATTTTGTTTGGTTATGATTTGTCGGCGTCAGCATCGAAACAGTTTGTGTTGC
TGTGGTGTTGAAAGGGATTGGGAAGTGGTGGGGGTGTGGGGATTTGGAGGATTTGGGAACATATGATTGATGGCTAATTG
GGTTGTGAATAATAAGGAAAAGTTTGAGAGGGACAGGAGGGTTTGGCAGAGGATTGTAGGTGCAGGGATATATGTGGTTG
TATAGATGAGAATCATGAGTTCAGTTCAGTTAAATTCAGTAGTAGTAAGACATAAGTTTTAGAACAAAAGGATTCTGTGT
CATTTCTTCCTGCTGTATCACAATTACTTCTGGCTATTCAATTCTTATTATTATTTAGTATGGATTCTTGAGAGTTGTTC
TTCTTATGTGTTGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8113.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis