Browse Element(s) Details


OsAffx.10965.1.S1_at

Description tigr:9629.m00784
TID=OsAffx.10965.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=TMS membrane proteintumour differentially expressed protein (TDE)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0846011/11TMS membrane family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g08430Os.17699.2.S1_x_at11/111+4140153..4147215expressed protein
LOC_Os01g08430Os.17699.1.S1_at11/111+4140153..4147215expressed protein
LOC_Os01g08440Os.8045.1.S1_at11/111+4149879..4151471Indole-3-acetate beta-glucosyltransferase, putative, expressed
LOC_Os01g08440OsAffx.9021.1.S1_x_at1/111+4149879..4151471Indole-3-acetate beta-glucosyltransferase, putative, expressed
LOC_Os01g08450Os.7869.1.S1_at11/111+4157347..4161166GTP-binding protein YPTM2, putative, expressed
LOC_Os01g08450Os.7869.1.S1_x_at11/111+4157347..4161166GTP-binding protein YPTM2, putative, expressed
LOC_Os01g08450OsAffx.24709.1.S1_x_at3/111+4157347..4161166GTP-binding protein YPTM2, putative, expressed
LOC_Os01g08460Os.27659.1.S1_x_at11/111+4163989..4170191TMS membrane family protein, putative, expressed
LOC_Os01g08460OsAffx.10965.1.S1_at11/111+4163989..4170191TMS membrane family protein, putative, expressed
LOC_Os01g08460Os.46982.1.A1_at7/111+4163989..4170191TMS membrane family protein, putative, expressed
LOC_Os01g08460Os.36817.1.S1_at1/111+4163989..4170191TMS membrane family protein, putative, expressed
LOC_Os01g08470Os.8113.1.S1_at11/111+4175962..4178214transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g08470Os.8113.2.S1_x_at11/111+4175962..4178214transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g08480NANA1+4184295..4188517retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g08490OsAffx.20858.5.S1_x_at11/111+4193739..4195635hypothetical protein
LOC_Os01g08490OsAffx.20858.1.S1_x_at5/111+4193739..4195635hypothetical protein
LOC_Os01g08490OsAffx.20858.4.S1_x_at3/111+4193739..4195635hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10965.1.S1_at--910--1111Chr01:4164132..4164156 (25 bp)
AGTGAGAGGGTGACTGAGATCTCTC
LOC_Os01g08460
OsAffx.10965.1.S1_at--169--8871Chr01:4164130..4164154 (25 bp)
TGAGAGGGTGACTGAGATCTCTCAT
LOC_Os01g08460
OsAffx.10965.1.S1_at--613--6011Chr01:4164129..4164153 (25 bp)
GAGAGGGTGACTGAGATCTCTCATG
LOC_Os01g08460
OsAffx.10965.1.S1_at--549--1331Chr01:4164128..4164152 (25 bp)
AGAGGGTGACTGAGATCTCTCATGT
LOC_Os01g08460
OsAffx.10965.1.S1_at--797--6131Chr01:4164127..4164151 (25 bp)
GAGGGTGACTGAGATCTCTCATGTG
LOC_Os01g08460
OsAffx.10965.1.S1_at--65--1071Chr01:4164126..4164150 (25 bp)
AGGGTGACTGAGATCTCTCATGTGA
LOC_Os01g08460
OsAffx.10965.1.S1_at--639--7711Chr01:4164125..4164149 (25 bp)
GGGTGACTGAGATCTCTCATGTGAT
LOC_Os01g08460
OsAffx.10965.1.S1_at--1117--8891Chr01:4164118..4164142 (25 bp)
TGAGATCTCTCATGTGATGCATGCA
LOC_Os01g08460
OsAffx.10965.1.S1_at--117--6051Chr01:4164117..4164141 (25 bp)
GAGATCTCTCATGTGATGCATGCAT
LOC_Os01g08460
OsAffx.10965.1.S1_at--1006--1271Chr01:4164116..4164140 (25 bp)
AGATCTCTCATGTGATGCATGCATC
LOC_Os01g08460
OsAffx.10965.1.S1_at--844--6411Chr01:4164115..4164139 (25 bp)
GATCTCTCATGTGATGCATGCATCT
LOC_Os01g08460
Target Sequence 
AGTGAGAGGGTGACTGAGATCTCTCATGTGATGCATGCATCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10965.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis