Browse Element(s) Details


Os.12810.2.S1_x_at

Description gb:NM_189536.1
DB_XREF= gi:34906155
GEN=P0509B06.15
TID=Os.12810.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.12810 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0509B06.15 (P0509B06.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0509B06.15 (P0509B06.15), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0841011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g08360OsAffx.10833.1.S1_at5/111+4096185..4098684hypothetical protein
LOC_Os01g08370Os.29008.1.S1_at11/111+4103630..4105343symbiosis-related disease resistance protein, putative, expressed
LOC_Os01g08370Os.29008.1.S1_x_at11/111+4103630..4105343symbiosis-related disease resistance protein, putative, expressed
LOC_Os01g08370Os.29008.2.S1_at7/111+4103630..4105343symbiosis-related disease resistance protein, putative, expressed
LOC_Os01g08380OsAffx.9719.1.S1_x_at11/111+4107492..4108805Transferase family protein, expressed
LOC_Os01g08390OsAffx.10964.1.S1_at11/111+4113253..4113745hypothetical protein
LOC_Os01g08400Os.31960.1.S1_at11/111+4114843..4119183Syntaxin 32, putative, expressed
LOC_Os01g08410Os.12810.2.S1_x_at11/111+4120222..4123159expressed protein
LOC_Os01g08410Os.12810.1.S1_at11/111+4120222..4123159expressed protein
LOC_Os01g08420Os.980.1.S1_a_at10/111+4130505..4137434expressed protein
LOC_Os01g08430Os.17699.2.S1_x_at11/111+4140153..4147215expressed protein
LOC_Os01g08430Os.17699.1.S1_at11/111+4140153..4147215expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005759cellular_componentmitochondrial matrix
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12810.2.S1_x_at--269--5331Chr01:4122097..4122121 (25 bp)
GAAGTGGATGATACCTCTGCTGAAC
LOC_Os01g08410
Os.12810.2.S1_x_at--962--9471Chr01:4122112..4122136 (25 bp)
TCTGCTGAACCTGCTGGTAAGAAAG
LOC_Os01g08410
Os.12810.2.S1_x_at--980--6691Chr01:4122142..4122166 (25 bp)
GTTCCTGTTGCACCGCCTAAAGATA
LOC_Os01g08410
Os.12810.2.S1_x_at--220--6491Chr01:4122163..4122187 (25 bp)
GATACGGAGAGGCAGCTGTCCAAAA
LOC_Os01g08410
Os.12810.2.S1_x_at--671--5911Chr01:4122205..4122229 (25 bp)
GAGCTAGCCGAACTTGATGCTGTTC
LOC_Os01g08410
Os.12810.2.S1_x_at--75--9131Chr01:4122222..4122246 (25 bp)
TGCTGTTCTGGCTGAGTTGGGAATT
LOC_Os01g08410
Os.12810.2.S1_x_at--467--10591Chr01:4122246..4122270 (25 bp)
TTCTGGTGGTTCAAGCAATGCTGCA
LOC_Os01g08410
Os.12810.2.S1_x_at--69--5091Chr01:4122485..4122509 (25 bp)
GCACCTTCAGAGAGCAAGAGTTCCA
LOC_Os01g08410
Os.12810.2.S1_x_at--35--8071Chr01:4122574..4122598 (25 bp)
GGAGACTGCCAGTGCAGAACCTGAT
LOC_Os01g08410
Os.12810.2.S1_x_at--1044--5431Chr01:4122590..4122614 (25 bp)
GAACCTGATGAAGACACAACCTCTG
LOC_Os01g08410
Os.12810.2.S1_x_at--1114--3691Chr01:4122726..4122750 (25 bp)
CTAGGCTCGCGGCAGCCAAGAAGAA
LOC_Os01g08410
Target Sequence 
GAAGTGGATGATACCTCTGCTGAACCTGCTGGTAAGAAAGCTGCAGTTCCTGTTGCACCGCCTAAAGATACGGAGAGGCA
GCTGTCCAAAAAGGAGTTGAAAAAGAAGGAGCTAGCCGAACTTGATGCTGTTCTGGCTGAGTTGGGAATTTCTGGTGGTT
CAAGCAATGCTGCACAGGATGAAAACAATGCTGAGAAGAAAGGTTCAAACCAAACTGGTGATGGAGATGCACCAGCACCT
TCAGAGAGCAAGAGTTCCAAGAAGAAGAAAAACAAGAAAGCAAAGGAGGCTAAAGAATCACAAGAACCAGCTGATGGGAC
AGAGGAGACTGCCAGTGCAGAACCTGATGAAGACACAACCTCTGTTGATGTGAAGGAGCGCTTAAAGAAGATGGCTTCAA
TGAAGAAAAAGAAATCAGGCAAAGAGTCAGACACAGCTGCAAAAATTGCAGCTGCTGAGGCTGCAGCAAGGAGCGCTAGG
CTCGCGGCAGCCAAGAAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12810.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis