Browse Element(s) Details


Os.12838.1.S1_at

Description gb:AK069642.1
DB_XREF= gi:32979666
TID=Os.12838.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.12838 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023026F11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023026F11, full insert sequence.
FL= gb:AK069642.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4976011/11pectinesterase inhibitor domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g49720NANA6+30078060..30080578retrotransposon protein, putative, unclassified
LOC_Os06g49730NANA6+30083830..30084117hypothetical protein
LOC_Os06g49740Os.13714.1.S1_at11/116+30086164..30088574expressed protein
LOC_Os06g49750NANA6+30091168..30092515expressed protein
LOC_Os06g49760Os.12838.1.S1_at11/116+30104877..30105835pectinesterase inhibitor domain containing protein, expressed
LOC_Os06g49770Os.47906.1.A1_at11/116+30112942..30114504Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os06g49780Os.14276.1.S1_at11/116+30116757..30117752expressed protein
LOC_Os06g49790Os.8460.1.S1_at11/116+30121868..30127016JD1, putative, expressed
LOC_Os06g49800Os.20605.1.S1_at10/116+30127201..30133099Ubiquitin interaction motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0046910molecular_functionpectinesterase inhibitor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12838.1.S1_at--703--4431Chr06:30105213..30105237 (25 bp)
GCCATCCGCGGTAAGATCGTCGAGG
LOC_Os06g49760
Os.12838.1.S1_at--986--3171Chr06:30105136..30105160 (25 bp)
CAATTAAACATCTACTCCTCCTATA
LOC_Os06g49760
Os.12838.1.S1_at--139--3531Chr06:30105128..30105152 (25 bp)
CATCTACTCCTCCTATAACTAATTA
LOC_Os06g49760
Os.12838.1.S1_at--656--8511Chr06:30105091..30105115 (25 bp)
TGGAATCTTGGTCGAGTTCATCTTC
LOC_Os06g49760
Os.12838.1.S1_at--648--4051Chr06:30105079..30105103 (25 bp)
CGAGTTCATCTTCGTCATGGGTTAA
LOC_Os06g49760
Os.12838.1.S1_at--963--9391Chr06:30105068..30105092 (25 bp)
TCGTCATGGGTTAATTAGCTCAGTT
LOC_Os06g49760
Os.12838.1.S1_at--314--4811Chr06:30105051..30105075 (25 bp)
GCTCAGTTAATCTCGATGCGTCGTC
LOC_Os06g49760
Os.12838.1.S1_at--278--9151Chr06:30105035..30105059 (25 bp)
TGCGTCGTCGTTGCTATGGTTGTAA
LOC_Os06g49760
Os.12838.1.S1_at--1080--7911Chr06:30105018..30105042 (25 bp)
GGTTGTAACATATACTGTACTGCTA
LOC_Os06g49760
Os.12838.1.S1_at--117--2971Chr06:30104950..30104974 (25 bp)
AATGGTTGAGTCTTTACACCGAAGA
LOC_Os06g49760
Os.12838.1.S1_at--396--3031Chr06:30104912..30104936 (25 bp)
AATCCGTGTTTTGCTTGCTAGGTAC
LOC_Os06g49760
Target Sequence 
GCCATCCGCGGTAAGATCGTCGAGGTCGCCCAGGTCACCAGCAACGCCCTCGCCCTCGTCAACCGCGTCGCCCCCGCCAA
TTAAACATCTACTCCTCCTATAACTAATTAAGCTTTTGTTCTTGGAATCTTGGTCGAGTTCATCTTCGTCATGGGTTAAT
TAGCTCAGTTAATCTCGATGCGTCGTCGTTGCTATGGTTGTAACATATACTGTACTGCTAGTTAATTATCAAGACTTAAT
TAAAAGAGTCGATGTAATATTGTAATGGTTGAGTCTTTACACCGAAGATGGTGAGGAAATTAATCCGTGTTTTGCTTGCT
AGGTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12838.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis