Browse Element(s) Details


Os.14276.1.S1_at

Description gb:AK061313.1
DB_XREF= gi:32971331
TID=Os.14276.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.14276 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-302-C10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-302-C10, full insert sequence.
FL= gb:AK061313.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4978011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g49750NANA6+30091168..30092515expressed protein
LOC_Os06g49760Os.12838.1.S1_at11/116+30104877..30105835pectinesterase inhibitor domain containing protein, expressed
LOC_Os06g49770Os.47906.1.A1_at11/116+30112942..30114504Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os06g49780Os.14276.1.S1_at11/116+30116757..30117752expressed protein
LOC_Os06g49790Os.8460.1.S1_at11/116+30121868..30127016JD1, putative, expressed
LOC_Os06g49800Os.20605.1.S1_at10/116+30127201..30133099Ubiquitin interaction motif family protein, expressed
LOC_Os06g49810Os.18081.1.S1_at11/116+30135599..30140160Glycosyltransferase QUASIMODO1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14276.1.S1_at--570--1811Chr06:30117320..30117344 (25 bp)
ACGCCAGGTACGTTCTCCACGCGGT
LOC_Os06g49780
Os.14276.1.S1_at--470--3551Chr06:30117447..30117471 (25 bp)
CATCACCGTGAAGCGCCATTACTGG
LOC_Os06g49780
Os.14276.1.S1_at--331--3591Chr06:30117463..30117487 (25 bp)
CATTACTGGAAGTGGGTGGACGACA
LOC_Os06g49780
Os.14276.1.S1_at--578--4571Chr06:30117539..30117563 (25 bp)
GCGCGCACTAGGAAGCATCAGACAT
LOC_Os06g49780
Os.14276.1.S1_at--832--391Chr06:30117555..30117579 (25 bp)
ATCAGACATGCATCTCGGCTGGCAA
LOC_Os06g49780
Os.14276.1.S1_at--99--471Chr06:30117566..30117590 (25 bp)
ATCTCGGCTGGCAATTTTTACCTTG
LOC_Os06g49780
Os.14276.1.S1_at--477--4271Chr06:30117586..30117610 (25 bp)
CCTTGCAAAATTCTGTAACTTCGTT
LOC_Os06g49780
Os.14276.1.S1_at--1056--8731Chr06:30117599..30117623 (25 bp)
TGTAACTTCGTTCGTGTCGACCAAC
LOC_Os06g49780
Os.14276.1.S1_at--403--7211Chr06:30117614..30117638 (25 bp)
GTCGACCAACGATTCGGTGTCATTT
LOC_Os06g49780
Os.14276.1.S1_at--668--7131Chr06:30117632..30117656 (25 bp)
GTCATTTTCGTGTTGTGATCCTCTC
LOC_Os06g49780
Os.14276.1.S1_at--965--9491Chr06:30117653..30117677 (25 bp)
TCTCCTGCTGCTGTCAAAAATATGG
LOC_Os06g49780
Target Sequence 
ACGCCAGGTACGTTCTCCACGCGGTGGACGCGGAGGTGGTCGAGGGCGTCCCCGAGGACGGCGAGTTCGACACGGAGGAG
GGCGGGGAGCACGAGGACGAGGTCGTCGTCGATGGAGCCGCCGCCGCCATCACCGTGAAGCGCCATTACTGGAAGTGGGT
GGACGACAACGACAACGACGAGGAGGATGTCGCCGGCGCCGAGGAGGGCGCGCGCCAGAGCGCGCACTAGGAAGCATCAG
ACATGCATCTCGGCTGGCAATTTTTACCTTGCAAAATTCTGTAACTTCGTTCGTGTCGACCAACGATTCGGTGTCATTTT
CGTGTTGTGATCCTCTCCTGCTGCTGTCAAAAATATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14276.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis