Browse Element(s) Details


Os.18081.1.S1_at

Description gb:AK068531.1
DB_XREF= gi:32978548
TID=Os.18081.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18081 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013155D09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013155D09, full insert sequence.
FL= gb:AK068531.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4981011/11Glycosyltransferase QUASIMODO1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g49770Os.47906.1.A1_at11/116+30112942..30114504Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os06g49780Os.14276.1.S1_at11/116+30116757..30117752expressed protein
LOC_Os06g49790Os.8460.1.S1_at11/116+30121868..30127016JD1, putative, expressed
LOC_Os06g49800Os.20605.1.S1_at10/116+30127201..30133099Ubiquitin interaction motif family protein, expressed
LOC_Os06g49810Os.18081.1.S1_at11/116+30135599..30140160Glycosyltransferase QUASIMODO1, putative, expressed
LOC_Os06g49820NANA6+30150745..30154077transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g49830NANA6+30160501..30161655expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016051biological_processcarbohydrate biosynthesis
GO:0045489biological_processpectin biosynthesis
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18081.1.S1_at--37--2491Chr06:30139573..30139597 (25 bp)
AACAGGCTGCTCTGGAAGCTTGGGA
LOC_Os06g49810
Os.18081.1.S1_at--254--4351Chr06:30139606..30139630 (25 bp)
CCAGGTCTCCTAACATTCTACAAGT
LOC_Os06g49810
Os.18081.1.S1_at--487--2091Chr06:30139635..30139659 (25 bp)
ACATCCCCTGGACAAATCATGGCAT
LOC_Os06g49810
Os.18081.1.S1_at--630--851Chr06:30139653..30139677 (25 bp)
ATGGCATGTTCTTGGCTTAGGGTAC
LOC_Os06g49810
Os.18081.1.S1_at--343--7231Chr06:30139764..30139788 (25 bp)
GTCGAAGTACCGACCATACTGGACA
LOC_Os06g49810
Os.18081.1.S1_at--519--9931Chr06:30139801..30139825 (25 bp)
TACGAGCACACCTATGTTCGTGGGT
LOC_Os06g49810
Os.18081.1.S1_at--847--6711Chr06:30139816..30139840 (25 bp)
GTTCGTGGGTGCAAGATCAGTCAAT
LOC_Os06g49810
Os.18081.1.S1_at--478--1311Chr06:30139964..30139988 (25 bp)
AGATGTTCTTTGTTCGTGTTGCTAC
LOC_Os06g49810
Os.18081.1.S1_at--766--9551Chr06:30140001..30140025 (25 bp)
TCTTATGTATGTAGTTGCCTCCCAC
LOC_Os06g49810
Os.18081.1.S1_at--289--151Chr06:30140050..30140074 (25 bp)
ATTAGCCCTCTGTGGTATCTGTAAC
LOC_Os06g49810
Os.18081.1.S1_at--542--671Chr06:30140103..30140127 (25 bp)
ATGAACCCTGTGATTGTTCTCACCT
LOC_Os06g49810
Target Sequence 
AACAGGCTGCTCTGGAAGCTTGGGACACTGCCGCCAGGTCTCCTAACATTCTACAAGTTAACACATCCCCTGGACAAATC
ATGGCATGTTCTTGGCTTAGGGTACAACCCATCCATCGAGCGCTCAGAAATAGATAACGCCGCCGTCATCCACTACAACG
GGAACATGAAGCCATGGCTGGAGATTGCAATGTCGAAGTACCGACCATACTGGACAAAGTACATCAACTACGAGCACACC
TATGTTCGTGGGTGCAAGATCAGTCAATAGGCTTTTTTTTTTCCTGGAGTGATTTCATTCTTTCAGTGATGAATAGCTAG
TGGGACTTGGAACCAAGCCCCCTTGTTAGACTTCGATATAGTAGGAACAACAGTAATTCCATTGCATGTTCAGATGTTCT
TTGTTCGTGTTGCTACTTGCTATAGGTATCTTATGTATGTAGTTGCCTCCCACATTCGTTTTCTAGCCCCCCTTTCCATT
AGCCCTCTGTGGTATCTGTAACCATCTTTTCTTTTCTTCAGAAAAGAATGATGAACCCTGTGATTGTTCTCACCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18081.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis