Browse Element(s) Details


Os.12880.1.S1_s_at

Description gb:AU198165
DB_XREF= gi:14714234
DB_XREF=AU198165
CLONE=S16034
TID=Os.12880.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.12880 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_200911.1 (A.thaliana) RNA-binding protein - like (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4351011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g43450OsAffx.32170.1.S1_at11/1112+26926922..26927804P21 protein, putative, expressed
LOC_Os12g43460NANA12+26928862..26931908retrotransposon protein, putative, unclassified
LOC_Os12g43470NANA12+26934737..26938071transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g43480Os.47463.1.S1_x_at1/1112+26939536..26944530transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g43480Os.14491.2.S1_x_at1/1112+26939536..26944530transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g43490OsAffx.32171.3.S1_at11/1112+26946519..26947438Alpha-amylase/trypsin inhibitor, putative, expressed
LOC_Os12g43500NANA12+26949986..26951207hypothetical protein
LOC_Os12g43510OsAffx.7879.1.S1_at11/1112+26951810..26952695expressed protein
LOC_Os12g43510Os.12880.1.S1_s_at11/1112+26951810..26952695expressed protein
LOC_Os12g43520Os.9668.1.S1_at11/1112+26963921..26968127CbbY protein, putative, expressed
LOC_Os12g43530OsAffx.7880.1.S1_at11/1112+26973985..26976015No apical meristem protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12880.1.S1_s_at--360--4411Chr12:26951866..26951890 (25 bp)
GCCACTCGCAGTAGTAAGCTCCTCG
LOC_Os12g43510
Os.12880.1.S1_s_at--824--1991Chr12:26951869..26951893 (25 bp)
ACTCGCAGTAGTAAGCTCCTCGCGT
LOC_Os12g43510
Os.12880.1.S1_s_at--264--5031Chr12:26951873..26951897 (25 bp)
GCAGTAGTAAGCTCCTCGCGTTGTG
LOC_Os12g43510
Os.12880.1.S1_s_at--811--6931Chr12:26951876..26951900 (25 bp)
GTAGTAAGCTCCTCGCGTTGTGGCT
LOC_Os12g43510
Os.12880.1.S1_s_at--723--4111Chr12:26952095..26952116 (22 bp)
CGAAGGTGTCGTGCCAGCTCCGACG
LOC_Os12g43510
Os.12880.1.S1_s_at--495--2891Chr12:26952095..26952118 (24 bp)
AAGGTGTCGTGCCAGCTCCGACGAC
LOC_Os12g43510
Os.12880.1.S1_s_at--404--7531Chr12:26952138..26952162 (25 bp)
GTGGCAGCTGCCGATACGACTTCCA
LOC_Os12g43510
Os.12880.1.S1_s_at--1077--1591Chr12:26952143..26952167 (25 bp)
AGCTGCCGATACGACTTCCAAGAAG
LOC_Os12g43510
Os.12880.1.S1_s_at--212--3831Chr12:26952145..26952169 (25 bp)
CTGCCGATACGACTTCCAAGAAGAT
LOC_Os12g43510
Os.12880.1.S1_s_at--839--3231Chr12:26952161..26952185 (25 bp)
CAAGAAGATACCAGTGGAAGGAGCA
LOC_Os12g43510
Os.12880.1.S1_s_at--499--5931Chr12:26952181..26952205 (25 bp)
GAGCAGGGCCGCACGAGGAGTACGT
LOC_Os12g43510
Target Sequence 
GCCACTCGCAGTAGTAAGCTCCTCGCGTTGTGGCTGTGCTGCGCGCTGCCGCTCATCATGTCCTCCACCGCCGCCGGCAC
CACCACTGCCACGACGCCGGCGGTCCAGCAGCAGCCTCAGCCTACGGCGGCGGCAGGCGCCGGCGAAGGTGTCGTGCCAG
CTCCGACGACCTCGACGGCGGCGTCGAACGTGGCAGCTGCCGATACGACTTCCAAGAAGATACCAGTGGAAGGAGCAGGG
CCGCACGAGGAGTACGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12880.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis