Browse Element(s) Details


Os.12954.1.S1_at

Description gb:AK072724.1
DB_XREF= gi:32982747
TID=Os.12954.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.12954 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023139K17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023139K17, full insert sequence.
FL= gb:AK072724.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g352201/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g35190Os.9423.1.S1_at11/112+21144841..21155500Chloride channel protein CLC-c, putative, expressed
LOC_Os02g35200Os.11308.1.S1_at11/112+21159188..21159817molybdopterin converting factor, subunit 1 family protein, expressed
LOC_Os02g35210OsAffx.2866.1.S1_at11/112+21160810..21164084NB-ARC domain containing protein
LOC_Os02g35220Os.12954.1.S1_at1/112+21166531..21168014expressed protein
LOC_Os02g35230Os.51699.1.S1_at11/112+21169120..21174303expressed protein
LOC_Os02g35230Os.17676.2.S1_at1/112+21169120..21174303expressed protein
LOC_Os02g35240NANA2+21178266..21178778AP2 domain containing protein
LOC_Os02g35250NANA2+21183316..21183816hypothetical protein
LOC_Os02g35260NANA2+21184800..21185279hypothetical protein
LOC_Os02g35270OsAffx.10637.4.S1_s_at7/112+21187494..21190742transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g35270OsAffx.10637.3.S1_s_at5/112+21187494..21190742transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g35270OsAffx.10637.1.S1_s_at3/112+21187494..21190742transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g35270OsAffx.32056.1.S1_x_at2/112+21187494..21190742transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12954.1.S1_at--983--7531Chr02:21166977..21167001 (25 bp)
GGGACTTCCCCATATTAAGATTGCA
LOC_Os02g35220
Os.12954.1.S1_at--995--1371Chr02:21165651..21165675 (25 bp)
AGAGCCTCTCAGTTTGCAGACCGTA
NONE
Os.12954.1.S1_at--282--951Chr02:21165576..21165600 (25 bp)
AGGACTTCTTCTGGTGCTGTGTTCC
NONE
Os.12954.1.S1_at--1010--8671Chr02:21165559..21165583 (25 bp)
TGTGTTCCCGTGGTCAATGGTTCAA
NONE
Os.12954.1.S1_at--547--1291Chr02:21165530..21165554 (25 bp)
AGATGAACCAGCCTACACAAACCTT
NONE
Os.12954.1.S1_at--711--9471Chr02:21165433..21165457 (25 bp)
TCTGAGTTGGTATTTGCCCCGATAT
NONE
Os.12954.1.S1_at--922--3371Chr02:21165394..21165418 (25 bp)
CACCAATGTATGTCGATGCCTGAGA
NONE
Os.12954.1.S1_at--767--6692Chr09:6032527..6032549 (22 bp)
GTTCCTTTTGATTTCTAAGCTGCCA
NONE
Os.12954.1.S1_at--204--4791Chr02:21165343..21165367 (25 bp)
GCTGCCATACCACATCTTGTTTATT
NONE
Os.12954.1.S1_at--3--10371Chr02:21165289..21165313 (25 bp)
TTTTACCCATTTGCCTTGTTATTAG
NONE
Os.12954.1.S1_at--158--10191Chr02:21165203..21165227 (25 bp)
TATAGTGTTACAGTTCTCCCACCAT
NONE
Target Sequence 
GGGACTTCCCCATATTAAGATTGCATTTGATGATAAGAGAGCCTCTCAGTTTGCAGACCGTACAGCTCGTCTCAACGAAG
CCTTCTTTGTGGCAAGACATATACCTATGCTGAGGACTTCTTCTGGTGCTGTGTTCCCGTGGTCAATGGTTCAATAAAAG
ATGAACCAGCCTACACAAACCTTCATAAAAGGAAGATAATGTGTTACGTAGTTAGCAGCAGATCTGCATGAGGAACACTA
GTAAGAGCAAGAGCATCTGAGTTGGTATTTGCCCCGATATTTTTCTCGTCGGGGCACCAATGTATGTCGATGCCTGAGAT
AGTAGATGTTCCTTTTGATTTCTAAGCTGCCATACCACATCTTGTTTATTTTGTCCCCCCCCCCCCCNTTTCTTTTTTTT
TTTACCCATTTGCCTTGTTATTAGGTCAAGTTCTGAAGTGTCAGTGTAGTNCCTGGACTTTTGTCAGTTGCNCTGTATGT
GTTTATTATAGTGTTACAGTTCTCCCACCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12954.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis