Browse Element(s) Details


Os.13016.1.S1_a_at

Description gb:AF402798.1
DB_XREF= gi:15430718
TID=Os.13016.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.13016 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) clone C1756_1A putative glutathione S-transferase OsGSTU11 mRNA, complete cds.
PROD=putative glutathione S-transferase OsGSTU11
FL= gb:AF402798.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0732011/11Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os07g140001/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g07310Os.23950.1.A1_at11/117+3643991..3655054polynucleotide phosphorylase, putative, expressed
LOC_Os07g07320Os.13016.1.S1_a_at11/117+3660674..3661707Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os07g07329NANA7+3662263..3662611NA
LOC_Os07g07340Os.52598.1.S1_at11/117+3667137..3670556Glucan endo-1,3-beta-glucosidase 5 precursor, putative, expressed
LOC_Os07g07340OsAffx.25749.1.S1_s_at2/117+3667137..3670556Glucan endo-1,3-beta-glucosidase 5 precursor, putative, expressed
LOC_Os07g07350Os.51482.1.S1_at11/117+3674265..3676709Zinc finger A20 and AN1 domains containing protein At2g36320, putative, expressed
LOC_Os07g07350Os.6805.1.A1_at11/117+3674265..3676709Zinc finger A20 and AN1 domains containing protein At2g36320, putative, expressed
LOC_Os07g07360OsAffx.28323.1.S1_at10/117+3679836..3682617hypothetical protein
LOC_Os07g07360OsAffx.3376.1.S1_at1/117+3679836..3682617hypothetical protein
LOC_Os07g07370NANA7+3683751..3683966A20-like zinc finger family protein
LOC_Os07g07380OsAffx.28324.1.S1_at11/117+3686657..3687025hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009407biological_processtoxin catabolism
GO:0005737cellular_componentcytoplasm
GO:0004364molecular_functionglutathione transferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13016.1.S1_a_at--463--5911Chr07:3661388..3661412 (25 bp)
GAGCTCTCGCGCTACGCGAGGAAGA
LOC_Os07g07320
Os.13016.1.S1_a_at--983--3291Chr07:3661419..3661443 (25 bp)
CACGGTAACGATTTGTGTTGTCCTG
LOC_Os07g07320
Os.13016.1.S1_a_at--548--8711Chr07:3661437..3661461 (25 bp)
TGTCCTGTGGTGTTTGTATCGTCAA
LOC_Os07g07320
Os.13016.1.S1_a_at--471--9831Chr07:3661464..3661488 (25 bp)
TAAATGTGGCACAAAGGTTGTCATC
LOC_Os07g07320
Os.13016.1.S1_a_at--862--7911Chr07:3661479..3661503 (25 bp)
GGTTGTCATCATTAGTGAGCATTCT
LOC_Os07g07320
Os.13016.1.S1_a_at--168--10411Chr07:3661490..3661514 (25 bp)
TTAGTGAGCATTCTTGCCGGTTTCT
LOC_Os07g07320
Os.13016.1.S1_a_at--850--7851Chr07:3661508..3661532 (25 bp)
GGTTTCTTCTCCAGTTTAAGTGTCT
LOC_Os07g07320
Os.13016.1.S1_a_at--961--6811Chr07:3661521..3661545 (25 bp)
GTTTAAGTGTCTGTGTTGCTTTTGT
LOC_Os07g07320
Os.13016.1.S1_a_at--346--2971Chr07:3661593..3661617 (25 bp)
AATGGACTGATTTGTGTGGACTTCT
LOC_Os07g07320
Os.13016.1.S1_a_at--1141--7473Chr10:2574292..2574316 (25 bp)
GTGTGGACTTCTTTCATATCTGTAA
NONE
Os.13016.1.S1_a_at--893--3872Chr07:3661625..3661649 (25 bp)
CTGTAATTCTTTCTTATCTTCTCCC
LOC_Os07g07320
Target Sequence 
GAGCTCTCGCGCTACGCGAGGAAGAAGTAGACACGGTAACGATTTGTGTTGTCCTGTGGTGTTTGTATCGTCAAAATAAA
TGTGGCACAAAGGTTGTCATCATTAGTGAGCATTCTTGCCGGTTTCTTCTCCAGTTTAAGTGTCTGTGTTGCTTTTGTTT
GGACTGCGGGGATGTTAGAATATATGGTAGTTAGAGTTATATTAGAATGGACTGATTTGTGTGGACTTCTTTCATATCTG
TAATTCTTTCTTATCTTCTCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13016.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis