Browse Element(s) Details


Os.13459.1.S1_at

Description gb:AK072108.1
DB_XREF= gi:32982131
TID=Os.13459.1
CNT=13
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.13459 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013118G21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013118G21, full insert sequence.
FL= gb:AK072108.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1217011/11uncharacterized plant-specific domain TIGR01589 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g12130Os.52479.1.S1_at11/115+6913172..6915906pentatricopeptide, putative, expressed
LOC_Os05g12140Os.8464.1.A1_at11/115+6916203..6919012Leucine Rich Repeat family protein, expressed
LOC_Os05g12150Os.51700.1.S1_at11/115+6921210..6923907Glycosyl hydrolase family 9 protein, expressed
LOC_Os05g12150Os.32667.2.S1_x_at1/115+6921210..6923907Glycosyl hydrolase family 9 protein, expressed
LOC_Os05g12160OsAffx.4310.1.S1_at11/115+6928117..6928627hypothetical protein
LOC_Os05g12170Os.13459.1.S1_at11/115+6936703..6943504uncharacterized plant-specific domain TIGR01589 family protein, expressed
LOC_Os05g12170OsAffx.14653.1.S1_x_at11/115+6936703..6943504uncharacterized plant-specific domain TIGR01589 family protein, expressed
LOC_Os05g12180OsAffx.26850.1.S1_x_at11/115+6955158..6957364Chalcone synthase 8, putative
LOC_Os05g12180OsAffx.26850.2.S1_at1/115+6955158..6957364Chalcone synthase 8, putative
LOC_Os05g12190OsAffx.26850.2.S1_at11/115+6961429..6962844Chalcone and stilbene synthases, N-terminal domain containing protein
LOC_Os05g12190OsAffx.26850.1.S1_x_at4/115+6961429..6962844Chalcone and stilbene synthases, N-terminal domain containing protein
LOC_Os05g12200OsAffx.14655.1.S1_at10/115+6966368..6967765TNP2, putative
LOC_Os05g12200OsAffx.3348.1.S1_at1/115+6966368..6967765TNP2, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13459.1.S1_at--642--7211Chr05:6936996..6937020 (25 bp)
GTCGTAGATTCAAAGACAAGAGTCT
LOC_Os05g12170
Os.13459.1.S1_at--153--2771Chr05:6936979..6937003 (25 bp)
AAGAGTCTCGAGAAACTCAGGTCAG
LOC_Os05g12170
Os.13459.1.S1_at--1098--5531Chr05:6936968..6936992 (25 bp)
GAAACTCAGGTCAGGCTGCTACTTG
LOC_Os05g12170
Os.13459.1.S1_at--363--8331Chr05:6936955..6936979 (25 bp)
GGCTGCTACTTGTAATGTTCTTCGC
LOC_Os05g12170
Os.13459.1.S1_at--939--731Chr05:6936941..6936965 (25 bp)
ATGTTCTTCGCAATGATGTATGCAA
LOC_Os05g12170
Os.13459.1.S1_at--914--431Chr05:6936917..6936941 (25 bp)
ATCTAAACTTATTTGTTGGCTTTCT
LOC_Os05g12170
Os.13459.1.S1_at--543--6591Chr05:6936903..6936927 (25 bp)
GTTGGCTTTCTTATTTAAACTGCCT
LOC_Os05g12170
Os.13459.1.S1_at--200--9551Chr05:6936895..6936919 (25 bp)
TCTTATTTAAACTGCCTTCTTTAGG
LOC_Os05g12170
Os.13459.1.S1_at--243--4451Chr05:6936882..6936906 (25 bp)
GCCTTCTTTAGGCAGTAAGCAGCCT
LOC_Os05g12170
Os.13459.1.S1_at--580--7051Chr05:6936868..6936892 (25 bp)
GTAAGCAGCCTTCCATCAAGTAGAA
LOC_Os05g12170
Os.13459.1.S1_at--284--2251Chr05:6936840..6936864 (25 bp)
AAATTTTGTGCTGACTAATCTTATT
LOC_Os05g12170
Target Sequence 
GTCGTAGATTCAAAGACAAGAGTCTCGAGAAACTCAGGTCAGGCTGCTACTTGTAATGTTCTTCGCAATGATGTATGCAA
TCTAAACTTATTTGTTGGCTTTCTTATTTAAACTGCCTTCTTTAGGCAGTAAGCAGCCTTCCATCAAGTAGAACTAAAAT
TTTGTGCTGACTAATCTTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13459.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis