Browse Element(s) Details


OsAffx.4310.1.S1_at

Description tigr:9633.m01083
TID=OsAffx.4310.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1216011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g12110OsAffx.26847.1.S1_at11/115+6905080..6905547hypothetical protein
LOC_Os05g12110OsAffx.26847.1.S1_x_at11/115+6905080..6905547hypothetical protein
LOC_Os05g12120OsAffx.26848.1.S1_at11/115+6907031..6907465hypothetical protein
LOC_Os05g12130Os.52479.1.S1_at11/115+6913172..6915906pentatricopeptide, putative, expressed
LOC_Os05g12140Os.8464.1.A1_at11/115+6916203..6919012Leucine Rich Repeat family protein, expressed
LOC_Os05g12150Os.51700.1.S1_at11/115+6921210..6923907Glycosyl hydrolase family 9 protein, expressed
LOC_Os05g12150Os.32667.2.S1_x_at1/115+6921210..6923907Glycosyl hydrolase family 9 protein, expressed
LOC_Os05g12160OsAffx.4310.1.S1_at11/115+6928117..6928627hypothetical protein
LOC_Os05g12170Os.13459.1.S1_at11/115+6936703..6943504uncharacterized plant-specific domain TIGR01589 family protein, expressed
LOC_Os05g12170OsAffx.14653.1.S1_x_at11/115+6936703..6943504uncharacterized plant-specific domain TIGR01589 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4310.1.S1_at--660--4751Chr05:6928573..6928597 (25 bp)
GCTGAGGGAGATGTCGACAATGGCG
LOC_Os05g12160
OsAffx.4310.1.S1_at--371--911Chr05:6928541..6928565 (25 bp)
AGGCGGTGCAGGGAACAGCTCCATC
LOC_Os05g12160
OsAffx.4310.1.S1_at--1031--4671Chr05:6928539..6928563 (25 bp)
GCGGTGCAGGGAACAGCTCCATCAA
LOC_Os05g12160
OsAffx.4310.1.S1_at--588--9051Chr05:6928535..6928559 (25 bp)
TGCAGGGAACAGCTCCATCAACAGA
LOC_Os05g12160
OsAffx.4310.1.S1_at--1108--371Chr05:6928519..6928543 (25 bp)
ATCAACAGAGGCAACTCTACCTCAT
LOC_Os05g12160
OsAffx.4310.1.S1_at--1095--6191Chr05:6928512..6928536 (25 bp)
GAGGCAACTCTACCTCATATTCCAG
LOC_Os05g12160
OsAffx.4310.1.S1_at--162--2551Chr05:6928507..6928531 (25 bp)
AACTCTACCTCATATTCCAGCGGAG
LOC_Os05g12160
OsAffx.4310.1.S1_at--842--9971Chr05:6928502..6928526 (25 bp)
TACCTCATATTCCAGCGGAGAGCCA
LOC_Os05g12160
OsAffx.4310.1.S1_at--803--8051Chr05:6928158..6928510 (25 bp)
GGAGAGCCATTCTCAGGCTTCACTT
LOC_Os05g12160
OsAffx.4310.1.S1_at--898--5851Chr05:6928155..6928507 (25 bp)
GAGCCATTCTCAGGCTTCACTTTCG
LOC_Os05g12160
OsAffx.4310.1.S1_at--719--10571Chr05:6928149..6928501 (25 bp)
TTCTCAGGCTTCACTTTCGTCGCCG
LOC_Os05g12160
Target Sequence 
GCTGAGGGAGATGTCGACAATGGCGATGGAGGAGGCGGTGCAGGGAACAGCTCCATCAACAGAGGCAACTCTACCTCATA
TTCCAGCGGAGAGCCATTCTCAGGCTTCACTTTCGTCGCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4310.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis