Browse Element(s) Details


OsAffx.26848.1.S1_at

Description tigr:9633.m01079
TID=OsAffx.26848.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1212011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g12070NANA5+6883419..6883667retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g12080NANA5+6895481..6895831hypothetical protein
LOC_Os05g12090OsAffx.26845.1.S1_at11/115+6899083..6899367VQ motif family protein, expressed
LOC_Os05g12100OsAffx.26846.1.S1_at11/115+6902221..6902990expressed protein
LOC_Os05g12110OsAffx.26847.1.S1_at11/115+6905080..6905547hypothetical protein
LOC_Os05g12110OsAffx.26847.1.S1_x_at11/115+6905080..6905547hypothetical protein
LOC_Os05g12120OsAffx.26848.1.S1_at11/115+6907031..6907465hypothetical protein
LOC_Os05g12130Os.52479.1.S1_at11/115+6913172..6915906pentatricopeptide, putative, expressed
LOC_Os05g12140Os.8464.1.A1_at11/115+6916203..6919012Leucine Rich Repeat family protein, expressed
LOC_Os05g12150Os.51700.1.S1_at11/115+6921210..6923907Glycosyl hydrolase family 9 protein, expressed
LOC_Os05g12150Os.32667.2.S1_x_at1/115+6921210..6923907Glycosyl hydrolase family 9 protein, expressed
LOC_Os05g12160OsAffx.4310.1.S1_at11/115+6928117..6928627hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26848.1.S1_at--340--2811Chr05:6907064..6907088 (25 bp)
AAGATTCGTGATGGCAGCGAGAAGA
LOC_Os05g12120
OsAffx.26848.1.S1_at--946--8491Chr05:6907075..6907099 (25 bp)
TGGCAGCGAGAAGAAGCAATTACCT
LOC_Os05g12120
OsAffx.26848.1.S1_at--1149--5371Chr05:6907084..6907108 (25 bp)
GAAGAAGCAATTACCTGCAGCAGCA
LOC_Os05g12120
OsAffx.26848.1.S1_at--525--7071Chr05:6907121..6907145 (25 bp)
GTCAAGGTCGTCCTGACGAGGAAAC
LOC_Os05g12120
OsAffx.26848.1.S1_at--797--7791Chr05:6907126..6907150 (25 bp)
GGTCGTCCTGACGAGGAAACAAGCG
LOC_Os05g12120
OsAffx.26848.1.S1_at--383--9271Chr05:6907131..6907155 (25 bp)
TCCTGACGAGGAAACAAGCGGCGCG
LOC_Os05g12120
OsAffx.26848.1.S1_at--651--951Chr05:6907139..6907163 (25 bp)
AGGAAACAAGCGGCGCGGCTCGTCT
LOC_Os05g12120
OsAffx.26848.1.S1_at--645--4151Chr05:6907198..6907222 (25 bp)
CGCGCAGCTTGTCCGCGAGCTGAGG
LOC_Os05g12120
OsAffx.26848.1.S1_at--819--3991Chr05:6907281..6907305 (25 bp)
CGTGGAGGCCAGTGCTCGAGACCAT
LOC_Os05g12120
OsAffx.26848.1.S1_at--436--8551Chr05:6907283..6907307 (25 bp)
TGGAGGCCAGTGCTCGAGACCATCT
LOC_Os05g12120
OsAffx.26848.1.S1_at--227--6211Chr05:6907285..6907309 (25 bp)
GAGGCCAGTGCTCGAGACCATCTCC
LOC_Os05g12120
Target Sequence 
AAGATTCGTGATGGCAGCGAGAAGAAGCAATTACCTGCAGCAGCAGGCGTCGTCAGGGTCAAGGTCGTCCTGACGAGGAA
ACAAGCGGCGCGGCTCGTCTCCCTCGCCGGCGAGGGGAGGAGGAGGAGGACCGCCGCGCAGCTTGTCCGCGAGCTGAGGA
GGATGGAGGACGGCGCCGGCCGTGTCGATGGCTCGCCGGCGACGGCGACGGCGACGGCGTGGAGGCCAGTGCTCGAGACC
ATCTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26848.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis