Browse Element(s) Details


OsAffx.26846.1.S1_at

Description tigr:9633.m01077
TID=OsAffx.26846.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1210011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g12060Os.46012.3.S1_x_at6/115+6873922..6879579retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g12060Os.46012.2.S1_x_at6/115+6873922..6879579retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g12060Os.27088.1.A1_x_at4/115+6873922..6879579retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g12060Os.54691.1.S1_x_at1/115+6873922..6879579retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g12070NANA5+6883419..6883667retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g12080NANA5+6895481..6895831hypothetical protein
LOC_Os05g12090OsAffx.26845.1.S1_at11/115+6899083..6899367VQ motif family protein, expressed
LOC_Os05g12100OsAffx.26846.1.S1_at11/115+6902221..6902990expressed protein
LOC_Os05g12110OsAffx.26847.1.S1_at11/115+6905080..6905547hypothetical protein
LOC_Os05g12110OsAffx.26847.1.S1_x_at11/115+6905080..6905547hypothetical protein
LOC_Os05g12120OsAffx.26848.1.S1_at11/115+6907031..6907465hypothetical protein
LOC_Os05g12130Os.52479.1.S1_at11/115+6913172..6915906pentatricopeptide, putative, expressed
LOC_Os05g12140Os.8464.1.A1_at11/115+6916203..6919012Leucine Rich Repeat family protein, expressed
LOC_Os05g12150Os.51700.1.S1_at11/115+6921210..6923907Glycosyl hydrolase family 9 protein, expressed
LOC_Os05g12150Os.32667.2.S1_x_at1/115+6921210..6923907Glycosyl hydrolase family 9 protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26846.1.S1_at--972--7331Chr05:6902603..6902627 (25 bp)
GTGTCCTACCGGAGATTATTACCAT
LOC_Os05g12100
OsAffx.26846.1.S1_at--222--371Chr05:6902574..6902598 (25 bp)
ATCAAGATACCATTGCTGGTGCCGT
LOC_Os05g12100
OsAffx.26846.1.S1_at--841--71Chr05:6902563..6902587 (25 bp)
ATTGCTGGTGCCGTGGTCAAGCAAC
LOC_Os05g12100
OsAffx.26846.1.S1_at--492--1931Chr05:6902477..6902501 (25 bp)
ACGGACGTGCGCTTGTCGACGAGGA
LOC_Os05g12100
OsAffx.26846.1.S1_at--202--2771Chr05:6902426..6902450 (25 bp)
AAGACGTAGTGTCCATCGAGCTCGG
LOC_Os05g12100
OsAffx.26846.1.S1_at--261--6151Chr05:6902400..6902424 (25 bp)
GAGGTCTACCTCTACGGATTTGCTA
LOC_Os05g12100
OsAffx.26846.1.S1_at--775--1731Chr05:6902393..6902417 (25 bp)
ACCTCTACGGATTTGCTAGTGCAGA
LOC_Os05g12100
OsAffx.26846.1.S1_at--215--10731Chr05:6902381..6902405 (25 bp)
TTGCTAGTGCAGACGTTGCGGAAGC
LOC_Os05g12100
OsAffx.26846.1.S1_at--791--10591Chr05:6902327..6902351 (25 bp)
TTCTCCCGGAGCATGGTCCAGTGGC
LOC_Os05g12100
OsAffx.26846.1.S1_at--226--2711Chr05:6902294..6902318 (25 bp)
AAGCAGCGGTCAACCGTGGGTCCGT
LOC_Os05g12100
OsAffx.26846.1.S1_at--508--7491Chr05:6902279..6902303 (25 bp)
GTGGGTCCGTGCAGCACTGTCGCCA
LOC_Os05g12100
Target Sequence 
GTGTCCTACCGGAGATTATTACCATCAGAATCAAGATACCATTGCTGGTGCCGTGGTCAAGCAACGGGATGAGCGGCGGG
AGCTCCGCGAGGTGGCGCGCGCGTGAGCGGGTTGAGCAGGCGGACGACGGACGTGCGCTTGTCGACGAGGAGGAGGAGGC
CCTCGCCTTTGGGGACGAAGACGTAGTGTCCATCGAGCTCGGGGAGGTCTACCTCTACGGATTTGCTAGTGCAGACGTTG
CGGAAGCGGCGGCGAGGGGTGGATGCTGTGGGGGCGTTCTCCCGGAGCATGGTCCAGTGGCGAGGGTGGAAGCAGCGGTC
AACCGTGGGTCCGTGCAGCACTGTCGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26846.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis