Browse Element(s) Details


Os.13479.1.S1_at

Description gb:AK108244.1
DB_XREF= gi:32993453
TID=Os.13479.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.13479 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-140-H04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-140-H04, full insert sequence.
FL= gb:AK108244.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2025011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g20220OsAffx.31069.1.S1_x_at1/1110+9818942..9821803retrotransposon protein, putative, unclassified
LOC_Os10g20230Os.20152.1.S2_at11/1110+9831493..9833702expressed protein
LOC_Os10g20230Os.20152.1.S1_a_at11/1110+9831493..9833702expressed protein
LOC_Os10g20240Os.8527.2.S1_x_at11/1110+9839135..9843093expressed protein
LOC_Os10g20240Os.8527.1.S1_at11/1110+9839135..9843093expressed protein
LOC_Os10g20250Os.13479.1.S1_at11/1110+9843145..9845939expressed protein
LOC_Os10g20260Os.46814.1.S1_at11/1110+9849044..9856261Cellulose synthase family protein, expressed
LOC_Os10g20270Os.44418.2.S1_at7/1110+9858684..9863139hypothetical protein
LOC_Os10g20270Os.44418.1.S1_at1/1110+9858684..9863139hypothetical protein
LOC_Os10g20280OsAffx.20490.1.S1_at11/1110+9866121..9869681transposon protein, putative, CACTA, En/Spm sub-class, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13479.1.S1_at--101--6731Chr10:9843817..9843841 (25 bp)
GTTCTTTGCGGAATCCACAGGCTGT
LOC_Os10g20250
Os.13479.1.S1_at--38--9451Chr10:9843671..9843802 (25 bp)
TCGGAGATGGGATCACAGGGACACT
LOC_Os10g20250
Os.13479.1.S1_at--812--2611Chr10:9843646..9843670 (25 bp)
AACCCTAGGTGCAGCATGTGCATCA
LOC_Os10g20250
Os.13479.1.S1_at--295--5011Chr10:9843621..9843645 (25 bp)
GCAGGCATCACCGTGCTCATTGGCA
LOC_Os10g20250
Os.13479.1.S1_at--777--6831Chr10:9843560..9843584 (25 bp)
GTTTCGAAACTGCAACCGCGATGGC
LOC_Os10g20250
Os.13479.1.S1_at--799--391Chr10:9843531..9843555 (25 bp)
ATCAGCTGGTTTGCACTTGCACCGT
LOC_Os10g20250
Os.13479.1.S1_at--442--6191Chr10:9843470..9843494 (25 bp)
GAGGACACAGCTTGTATTTAGACAT
LOC_Os10g20250
Os.13479.1.S1_at--166--8771Chr10:9843435..9843459 (25 bp)
TGTTTGTCAGCCAGATCACTCGGTG
LOC_Os10g20250
Os.13479.1.S1_at--637--7731Chr10:9843288..9843312 (25 bp)
GGTGGTTGTGAAGCTCTGCAATTTT
LOC_Os10g20250
Os.13479.1.S1_at--333--1371Chr10:9843207..9843231 (25 bp)
AGAGCTCAACGTGCCGATTTGTTAT
LOC_Os10g20250
Os.13479.1.S1_at--1147--8671Chr10:9843164..9843188 (25 bp)
TGTGATCTTCATTCCCGAGAAATAT
LOC_Os10g20250
Target Sequence 
GTTCTTTGCGGAATCCACAGGCTGTGTGTATATTTACCATCGGAGATGGGATCACAGGGACACTNAACCCTAGGTGCAGC
ATGTGCATCANGCAGGCATCACCGTGCTCATTGGCANATGACCTGAACATATGCNNCAANCAATCACTGTGCAAGTTTCG
AAACTGCAACCGCGATGGCTTTCATCAGCTGGTTTGCACTTGCACCGTCCTGCGTCTTGAACTTCTGGTCGATGGCCTCC
ANGATGAGGACACAGCTTGTATTTAGACATAATTTTGGGCTGTTTGTCAGCCAGATCACTCGGTGCNACAGCCAGGAGAA
AACGTAGTGCAGCTAATTATACTACGACCNAGTTGATGAATGCCTGTGTAATGAAATTTGGTGTCGAATTGTTTGTACNA
AATAGGGGATAGTTTGTTCTGCNAGAGGGTGGTTGTGAAGCTCTGCAATTTTTTTTTTTTTTNGAAAACGGCATGTTTCT
TGTAAGAAGCTTTTTGTGATCTGAAAACACAGAGCTCAACGTGCCGATTTGTTATGTCATTTTATTATTNTGATGTGATC
TTCATTCCCGAGAAATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13479.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis