Browse Element(s) Details


Os.20152.1.S1_a_at

Description gb:AK121406.1
DB_XREF= gi:37991029
TID=Os.20152.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20152 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0035F15.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023132I19, full insert sequence.
FL= gb:AK121406.1 gb:AK069512.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2023011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g20190Os.45173.5.S1_x_at4/1110+9805577..9811053retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g20200Os.47999.3.S1_x_at1/1110+9813435..9814859retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g20200OsAffx.10020.1.S1_x_at1/1110+9813435..9814859retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g20210NANA10+9815777..9816467hypothetical protein
LOC_Os10g20220OsAffx.31069.1.S1_x_at1/1110+9818942..9821803retrotransposon protein, putative, unclassified
LOC_Os10g20230Os.20152.1.S2_at11/1110+9831493..9833702expressed protein
LOC_Os10g20230Os.20152.1.S1_a_at11/1110+9831493..9833702expressed protein
LOC_Os10g20240Os.8527.2.S1_x_at11/1110+9839135..9843093expressed protein
LOC_Os10g20240Os.8527.1.S1_at11/1110+9839135..9843093expressed protein
LOC_Os10g20250Os.13479.1.S1_at11/1110+9843145..9845939expressed protein
LOC_Os10g20260Os.46814.1.S1_at11/1110+9849044..9856261Cellulose synthase family protein, expressed
LOC_Os10g20270Os.44418.2.S1_at7/1110+9858684..9863139hypothetical protein
LOC_Os10g20270Os.44418.1.S1_at1/1110+9858684..9863139hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20152.1.S1_a_at--299--9511Chr10:9831678..9831702 (25 bp)
TCTCCCATGACGTCCCCAGTGAGAG
LOC_Os10g20230
Os.20152.1.S1_a_at--316--691Chr10:9831684..9831708 (25 bp)
ATGACGTCCCCAGTGAGAGCAGGGC
LOC_Os10g20230
Os.20152.1.S1_a_at--1159--3371Chr10:9831820..9831844 (25 bp)
CAGCGACGAGATCCGACGAAGACAA
LOC_Os10g20230
Os.20152.1.S1_a_at--307--1291Chr10:9831828..9831852 (25 bp)
AGATCCGACGAAGACAATGCCTCTC
LOC_Os10g20230
Os.20152.1.S1_a_at--845--8411Chr10:9832088..9832112 (25 bp)
GGCCGCAGCGTCGTTTATTGCTGTA
LOC_Os10g20230
Os.20152.1.S1_a_at--160--4651Chr10:9832095..9832119 (25 bp)
GCGTCGTTTATTGCTGTACCACTTT
LOC_Os10g20230
Os.20152.1.S1_a_at--459--6971Chr10:9832110..9832134 (25 bp)
GTACCACTTTGAATGACACCACCGG
LOC_Os10g20230
Os.20152.1.S1_a_at--219--6511Chr10:9832134..9832158 (25 bp)
GATTTGGACTGCAAATCCACCTCGC
LOC_Os10g20230
Os.20152.1.S1_a_at--1143--371Chr10:9832160..9832184 (25 bp)
ATCACAGGCATACTACCTCTACCTG
LOC_Os10g20230
Os.20152.1.S1_a_at--262--1751Chr10:9832174..9832198 (25 bp)
ACCTCTACCTGCCATGTGGATTTTG
LOC_Os10g20230
Os.20152.1.S1_a_at--727--9971Chr10:9832179..9832203 (25 bp)
TACCTGCCATGTGGATTTTGATGCA
LOC_Os10g20230
Target Sequence 
TCTCCCATGACGTCCCCAGTGAGAGCAGGGCGAGGCCCTCTCCTCGCACGCGCCGGCGACCCTCCATCTCCTCCTCATCG
TCGCTTGATGGGGGCGAGGAGCTCGGTGACGGCGCGCAGGGACTTGGGGAGCAGCACGCCGGCAGCGACGAGATCCGACG
AAGACAATGCCTCTCCCCTCTCAAGCTCGGGGCAGCATGGCGACGGGGCTCCTCGAGCGGCTGCGGCTCAAATCCGGCCC
GCCGCCGTCCCCTCCTCCTGGTTGCTGGATTGGGGGAGGAGCTCGATGGTGGCAAGCCGAGGGGATTCGTGTCCGCCGCA
CAGCCCCACCACGCCGTCTCGGCCTCCACATCGCACGGAGCCGCCGCACGGCCTCGTCCTCGCCGTCGCCCGGCCGCGAC
GCCCACGGCCGGCCGCAGCGTCGTTTATTGCTGTACCACTTTGAATGACACCACCGGATTTGGACTGCAAATCCACCTCG
CCATCACAGGCATACTACCTCTACCTGCCATGTGGATTTTGATGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20152.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis