Browse Element(s) Details


Os.13490.1.S1_at

Description gb:AK066546.1
DB_XREF= gi:32976564
TID=Os.13490.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.13490 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-306-H11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013070L16, full insert sequence.
FL= gb:AK061732.1 gb:AK104574.1 gb:AK066546.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5158010/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g51530NANA4+30307162..30310450retrotransposon protein, putative, unclassified
LOC_Os04g51540NANA4+30311074..30317228retrotransposon protein, putative, unclassified
LOC_Os04g51550NANA4+30317862..30318772retrotransposon protein, putative, unclassified
LOC_Os04g51560Os.49549.1.S1_at11/114+30326094..30327436WRKY DNA binding domain containing protein, expressed
LOC_Os04g51570Os.55428.1.S1_at11/114+30331885..30333052IP05629p, putative, expressed
LOC_Os04g51580Os.13490.1.S1_at10/114+30333936..30339315Leucine Rich Repeat family protein, expressed
LOC_Os04g51580Os.52574.2.S1_x_at1/114+30333936..30339315Leucine Rich Repeat family protein, expressed
LOC_Os04g51580Os.46481.2.S1_x_at1/114+30333936..30339315Leucine Rich Repeat family protein, expressed
LOC_Os04g51590Os.53290.1.S1_at1/114+30344883..30349190retrotransposon protein, putative, unclassified
LOC_Os04g51600OsAffx.26562.1.S1_at10/114+30350935..30352635hypothetical protein
LOC_Os04g51600Os.47086.1.S1_at1/114+30350935..30352635hypothetical protein
LOC_Os04g51610Os.28422.1.S1_at11/114+30353060..30365210Calcium-transporting ATPase 9, plasma membrane-type, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13490.1.S1_at--357--8591Chr04:30334415..30334439 (25 bp)
TGGTCAAGTACAGCACCTTCACGGC
LOC_Os04g51580
Os.13490.1.S1_at--550--9031Chr04:30334364..30334388 (25 bp)
TGCACGAGAACACGGAGGGCCTCCT
LOC_Os04g51580
Os.13490.1.S1_at--476--9631Chr04:30334340..30334364 (25 bp)
TCATGTCGGACTACCGGTCGCTCAA
LOC_Os04g51580
Os.13490.1.S1_at--920--5691Chr04:30334332..30334356 (25 bp)
GACTACCGGTCGCTCAACGGCATCG
LOC_Os04g51580
Os.13490.1.S1_at--1097--4511Chr04:30334261..30334285 (25 bp)
GCCGCGGAGGAATTCGCCCAAGCAT
LOC_Os04g51580
Os.13490.1.S1_at--706--3771Chr04:30334211..30334235 (25 bp)
CTCTGCCTACTCTGTGTACTGGTTG
LOC_Os04g51580
Os.13490.1.S1_at--139--8751Chr04:30334197..30334221 (25 bp)
TGTACTGGTTGCCTGTTTGCTTCAG
LOC_Os04g51580
Os.13490.1.S1_at--24--1311Chr04:30334161..30334185 (25 bp)
AGATGATGTCATGCTCTCGTACTTA
LOC_Os04g51580
Os.13490.1.S1_at--803--8731Chr04:30334155..30334179 (25 bp)
TGTCATGCTCTCGTACTTAATTAGG
LOC_Os04g51580
Os.13490.1.S1_at--1079--6851Chr04:30333945..30333969 (25 bp)
GTTTGTTAAGCACCACTGATGCAGT
LOC_Os04g51580
Os.13490.1.S1_at--17--5091Chr04:30333936..30333960 (25 bp)
GCACCACTGATGCAGTGTTCTGGGT
NONE
Target Sequence 
TGGTCAAGTACAGCACCTTCACGGCGAGGATGACGCCCGGGCGCACCAGGGTGCACGAGAACACGGAGGGCCTCCTCATG
TCGGACTACCGGTCGCTCAACGGCATCGCCTCGCCGAGGTTCCTCACCATGCTCTCGCCGCGCCGCCTCTTCTCGCCGCG
GAGGAATTCGCCCAAGCATTGTTGATATGNCCGATCCGATCCGCCTCTGCCTACTCTGTGTACTGGTTGCCTGTTTGCTT
CAGGGGTGTACTTCAGATGATGTCATGCTCTCGTACTTAATTAGGATAGATATGATGATGCTGCTGCTGCTAGCTGCTAC
CGCTGCTGCAAGGTGTGTATATGTTCTCATGAAGAGGTTTGTAGCTTCGCATNCAGTATATAGCTCTACAATTTTTGTTT
GACGNAAAAAATGCTGTAGTACAATCTAGAGCATTGATGTACATAACAAGGGTAATTTTNTTCCATGTCTGTTTGTTAAG
CACCACTGATGCAGTGTTCTGGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13490.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis