Browse Element(s) Details


OsAffx.26562.1.S1_at

Description tigr:9632.m04987
TID=OsAffx.26562.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5160010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g51560Os.49549.1.S1_at11/114+30326094..30327436WRKY DNA binding domain containing protein, expressed
LOC_Os04g51570Os.55428.1.S1_at11/114+30331885..30333052IP05629p, putative, expressed
LOC_Os04g51580Os.13490.1.S1_at10/114+30333936..30339315Leucine Rich Repeat family protein, expressed
LOC_Os04g51580Os.52574.2.S1_x_at1/114+30333936..30339315Leucine Rich Repeat family protein, expressed
LOC_Os04g51580Os.46481.2.S1_x_at1/114+30333936..30339315Leucine Rich Repeat family protein, expressed
LOC_Os04g51590Os.53290.1.S1_at1/114+30344883..30349190retrotransposon protein, putative, unclassified
LOC_Os04g51600OsAffx.26562.1.S1_at10/114+30350935..30352635hypothetical protein
LOC_Os04g51600Os.47086.1.S1_at1/114+30350935..30352635hypothetical protein
LOC_Os04g51610Os.28422.1.S1_at11/114+30353060..30365210Calcium-transporting ATPase 9, plasma membrane-type, putative, expressed
LOC_Os04g51620NANA4+30375103..30376055hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26562.1.S1_at--823--10291Chr04:30351001..30351025 (25 bp)
TTTCAGACTCCTTTGCGTCGCAGAG
LOC_Os04g51600
OsAffx.26562.1.S1_at--332--9931Chr04:30351041..30351065 (25 bp)
TACGGCTGCCGAGATTGTGGTTCTT
LOC_Os04g51600
OsAffx.26562.1.S1_at--563--10051Chr04:30351075..30351099 (25 bp)
TAGGACTAACCAAACGTGCCCAGAT
LOC_Os04g51600
OsAffx.26562.1.S1_at--839--5531NONE
GAAACGACCCAGTGAGTCTAGTCTA
NONE
OsAffx.26562.1.S1_at--1141--2231Chr04:30351819..30351843 (25 bp)
ACAATTGCTGTGAGGGTCCGGCTGC
LOC_Os04g51600
OsAffx.26562.1.S1_at--790--10591Chr04:30351863..30351885 (23 bp)
TTCTCCCGTGGATTACTCAAGGTGG
LOC_Os04g51600
OsAffx.26562.1.S1_at--278--1351Chr04:30352411..30352435 (25 bp)
AGAGATTCGACATGCTCCTACACGA
LOC_Os04g51600
OsAffx.26562.1.S1_at--292--8091Chr04:30352486..30352510 (25 bp)
GGACCCGCTTCCAACAGAAAACAGA
LOC_Os04g51600
OsAffx.26562.1.S1_at--169--2291Chr04:30352532..30352556 (25 bp)
AAATGCGCCAGGTTGCTGGACGCAC
LOC_Os04g51600
OsAffx.26562.1.S1_at--780--9011Chr04:30352558..30352582 (25 bp)
TGCAAGGCTGCAGTCGAAACGAATT
LOC_Os04g51600
OsAffx.26562.1.S1_at--1113--3111Chr04:30352579..30352603 (25 bp)
AATTTTCAGACGCATATGGCCCCGA
LOC_Os04g51600
Target Sequence 
TTTCAGACTCCTTTGCGTCGCAGAGCAGCGAGCTCCGTTTTACGGCTGCCGAGATTGTGGTTCTTGGAGGGGTTTAGGAC
TAACCAAACGTGCCCAGATAAGGATGAAGGCCGCGCTGCATTGAATGGGGAAATAGACCGGTCGAAACGACCCAGTGAGT
CTAGTCTAGAGCGGTTAAACGTCAACAATTGCTGTGAGGGTCCGGCTGCTTGCTCTGGGTTGGTCTGGTTCTCCCGTGGA
TTACTCAAGGTGGCTAGAGATTCGACATGCTCCTACACGATAGTAAATGACCAAAGAAAAGCAGCAACGAAAGTGCAACA
AGCGGCCAGAGGACCCGCTTCCAACAGAAAACAGAAGAAAAATCCCAAACCATCTGAAATGCGCCAGGTTGCTGGACGCA
CCTGCAAGGCTGCAGTCGAAACGAATTTTCAGACGCATATGGCCCCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26562.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis