Browse Element(s) Details


Os.1354.1.S1_a_at

Description gb:AY363174.1
DB_XREF= gi:34398296
GEN=IPMDHSU
TID=Os.1354.1
CNT=29
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.1354 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) 3-isopropylmalate dehydratase small subunit (IPMDHSU) mRNA, complete cds.
PROD=3-isopropylmalate dehydratase small subunit
FL= gb:AY363174.1 gb:AK061544.1 gb:AK106107.1 gb:AK103778.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4383011/113-isopropylmalate dehydratase, small subunit family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g43810Os.1352.1.S1_at11/112+26436520..26438702expressed protein
LOC_Os02g43820Os.38982.1.S1_at11/112+26450581..26451879AP2 domain containing protein, expressed
LOC_Os02g43830Os.1354.1.S1_a_at11/112+26459827..264634113-isopropylmalate dehydratase, small subunit family protein, expressed
LOC_Os02g43840Os.53419.1.S1_at11/112+26465764..26467753UPF0326 protein hag1, putative, expressed
LOC_Os02g43850Os.27802.1.S1_s_at11/112+26470792..26475258serine esterase family protein, expressed
LOC_Os02g43860Os.22680.1.S1_at11/112+26481468..26485355amino acid transporter, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0016836molecular_functionhydro-lyase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1354.1.S1_a_at--617--2531Chr02:26462805..26462829 (25 bp)
AACTCCGTGGCCACCGGTGAGGTCT
LOC_Os02g43830
Os.1354.1.S1_a_at--109--8891Chr02:26462788..26462812 (25 bp)
TGAGGTCTACCCGTTGGAGCTAGCG
LOC_Os02g43830
Os.1354.1.S1_a_at--679--10831Chr02:26462775..26462799 (25 bp)
TTGGAGCTAGCGGACACTGGAGCCT
LOC_Os02g43830
Os.1354.1.S1_a_at--479--7491Chr02:26462727..26462751 (25 bp)
GTGGTCACGGTGGAACTTGATAATT
LOC_Os02g43830
Os.1354.1.S1_a_at--1023--51Chr02:26462705..26462729 (25 bp)
ATTGCGTCATGATCAACCACACATC
LOC_Os02g43830
Os.1354.1.S1_a_at--785--9711Chr02:26462693..26462717 (25 bp)
TCAACCACACATCCGGCAAGCAGTA
LOC_Os02g43830
Os.1354.1.S1_a_at--530--1611Chr02:26462666..26462690 (25 bp)
AGCTGAAGCCTATCGGCGATGCCGG
LOC_Os02g43830
Os.1354.1.S1_a_at--1008--8871Chr02:26462632..26462656 (25 bp)
TGAGGCAGGCGGGATCTTTGCCTAT
LOC_Os02g43830
Os.1354.1.S1_a_at--171--7971Chr02:26462621..26462645 (25 bp)
GGATCTTTGCCTATGCCCGGAAGAC
LOC_Os02g43830
Os.1354.1.S1_a_at--756--8191Chr02:26462603..26462627 (25 bp)
GGAAGACCGGAATGATCGCATCCAA
LOC_Os02g43830
Os.1354.1.S1_a_at--694--531Chr02:26462589..26462613 (25 bp)
ATCGCATCCAAGTCTGCGTGAGGGA
LOC_Os02g43830
Target Sequence 
AACTCCGTGGCCACCGGTGAGGTCTACCCGTTGGAGCTAGCGGACACTGGAGCCTGGAAGGAGTGCAAGACCGGGGATGT
GGTCACGGTGGAACTTGATAATTGCGTCATGATCAACCACACATCCGGCAAGCAGTACAAGCTGAAGCCTATCGGCGATG
CCGGGCCGGTTATTGAGGCAGGCGGGATCTTTGCCTATGCCCGGAAGACCGGAATGATCGCATCCAAGTCTGCGTGAGGG
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1354.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis