Browse Element(s) Details


Os.53419.1.S1_at

Description gb:AK072538.1
DB_XREF= gi:32982561
TID=Os.53419.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53419 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023132B16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023132B16, full insert sequence.
FL= gb:AK072538.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4384011/11UPF0326 protein hag1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g43820Os.38982.1.S1_at11/112+26450581..26451879AP2 domain containing protein, expressed
LOC_Os02g43830Os.1354.1.S1_a_at11/112+26459827..264634113-isopropylmalate dehydratase, small subunit family protein, expressed
LOC_Os02g43840Os.53419.1.S1_at11/112+26465764..26467753UPF0326 protein hag1, putative, expressed
LOC_Os02g43850Os.27802.1.S1_s_at11/112+26470792..26475258serine esterase family protein, expressed
LOC_Os02g43860Os.22680.1.S1_at11/112+26481468..26485355amino acid transporter, putative, expressed
LOC_Os02g43870Os.4943.1.S1_at11/112+26488631..26491835Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53419.1.S1_at--209--3271Chr02:26467024..26467044 (21 bp)
CAACTCTTCGTCCAGTAGCTGATGA
LOC_Os02g43840
Os.53419.1.S1_at--505--10171Chr02:26467355..26467379 (25 bp)
TATCATCGCAAGTGCTGCAGTCGGG
LOC_Os02g43840
Os.53419.1.S1_at--354--3171Chr02:26467386..26467410 (25 bp)
AATTGTTTCTCGAGGTGACTTCATA
LOC_Os02g43840
Os.53419.1.S1_at--219--7371Chr02:26467400..26467424 (25 bp)
GTGACTTCATAGGACAACACCGTTG
LOC_Os02g43840
Os.53419.1.S1_at--458--2471Chr02:26467415..26467439 (25 bp)
AACACCGTTGAGCAGAGGTTCCCGT
LOC_Os02g43840
Os.53419.1.S1_at--900--7891Chr02:26467431..26467455 (25 bp)
GGTTCCCGTTCGTGATACTGATTTC
LOC_Os02g43840
Os.53419.1.S1_at--752--6831Chr02:26467466..26467490 (25 bp)
GTTTCCTGTCCAAGTAGGTACACTG
LOC_Os02g43840
Os.53419.1.S1_at--866--71Chr02:26467504..26467528 (25 bp)
ATTGCCCATCTTTCCAGCTATTTGT
LOC_Os02g43840
Os.53419.1.S1_at--613--4871Chr02:26467520..26467544 (25 bp)
GCTATTTGTTGTTTCACTATCGTAC
LOC_Os02g43840
Os.53419.1.S1_at--920--6051Chr02:26467548..26467572 (25 bp)
GAGATTGTTGTATCGTCCTTGCTAC
LOC_Os02g43840
Os.53419.1.S1_at--995--8211Chr02:26467581..26467605 (25 bp)
GGAATATCATCCATGCTACTTTGGT
LOC_Os02g43840
Target Sequence 
CAACTCTTCGTCCAGTAGCTGATGATGATTTGGATTCAATATCCACAGTTAGTGACAACAATGAGGAGGACAAACACTTG
CTGCCAGCACCGTCGAATGACCTACATTCCGTAGATGTACCATTAAAGTTAGCCAAAGATGTTCTTTGAATTGTTTCATA
TTTTCACAAAACATGCCATATTATCATCGCAAGTGCTGCAGTCGGGGTGCTGAATTGTTTCTCGAGGTGACTTCATAGGA
CAACACCGTTGAGCAGAGGTTCCCGTTCGTGATACTGATTTCTTTTTTCAGAGTTTCCTGTCCAAGTAGGTACACTGTAT
ACAAATAGGAATTGCCCATCTTTCCAGCTATTTGTTGTTTCACTATCGTACAGTGAGATTGTTGTATCGTCCTTGCTACT
TTTTTATGGAATATCATCCATGCTACTTTGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53419.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis