Browse Element(s) Details


Os.38982.1.S1_at

Description gb:AY339378.1
DB_XREF= gi:33440023
TID=Os.38982.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.38982 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) Ap25 mRNA, complete cds.
PROD=Ap25
FL= gb:AY339378.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4382011/11AP2 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g43800OsAffx.22848.4.S1_at2/112+26423468..26429759retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g43800OsAffx.22848.4.S1_x_at1/112+26423468..26429759retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g43800OsAffx.22848.3.S1_x_at1/112+26423468..26429759retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g43810Os.1352.1.S1_at11/112+26436520..26438702expressed protein
LOC_Os02g43820Os.38982.1.S1_at11/112+26450581..26451879AP2 domain containing protein, expressed
LOC_Os02g43830Os.1354.1.S1_a_at11/112+26459827..264634113-isopropylmalate dehydratase, small subunit family protein, expressed
LOC_Os02g43840Os.53419.1.S1_at11/112+26465764..26467753UPF0326 protein hag1, putative, expressed
LOC_Os02g43850Os.27802.1.S1_s_at11/112+26470792..26475258serine esterase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009873biological_processethylene mediated signaling pathway
GO:0005634cellular_componentnucleus
GO:0005643cellular_componentnuclear pore
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38982.1.S1_at--462--5731Chr02:26451410..26451434 (25 bp)
GACGTCGACCCACGGCAAACGGAAG
LOC_Os02g43820
Os.38982.1.S1_at--1142--5211Chr02:26451480..26451504 (25 bp)
GAATCATCCAAATCCGTCAAGACCG
LOC_Os02g43820
Os.38982.1.S1_at--13--2771Chr02:26451498..26451522 (25 bp)
AAGACCGAGACGTACACATCGCCGG
LOC_Os02g43820
Os.38982.1.S1_at--614--2571Chr02:26451554..26451578 (25 bp)
AACGGTGACATCATCATCCACGTCG
LOC_Os02g43820
Os.38982.1.S1_at--1018--5071Chr02:26451707..26451731 (25 bp)
GCACCCGCAAATGGGATTCCCGGAG
LOC_Os02g43820
Os.38982.1.S1_at--413--4471Chr02:26451735..26451759 (25 bp)
GCCGTAAACTAATTAAGCGCGCTAA
LOC_Os02g43820
Os.38982.1.S1_at--997--9791Chr02:26451748..26451772 (25 bp)
TAAGCGCGCTAATGATCTCTCTAAG
LOC_Os02g43820
Os.38982.1.S1_at--783--3131Chr02:26451780..26451804 (25 bp)
AATTAGGCGCAATAATCGGCAATTA
LOC_Os02g43820
Os.38982.1.S1_at--1112--3131Chr02:26451804..26451828 (25 bp)
AATTAGTGGCTTCTAGTTCTCGACG
LOC_Os02g43820
Os.38982.1.S1_at--37--10651Chr02:26451832..26451856 (25 bp)
TTCGCTTTGGACACATCTCAGGAGA
LOC_Os02g43820
Os.38982.1.S1_at--232--1271Chr02:26451854..26451878 (25 bp)
AGATTTGGCTTGGAGCAGTGTACTA
LOC_Os02g43820
Target Sequence 
GACGTCGACCCACGGCAAACGGAAGCGGCACGAGACGGCGGCGGCCGACCCGGACGTCGAGGTGATCGGAGAATCATCCA
AATCCGTCAAGACCGAGACGTACACATCGCCGGCGTCGTCGTCGCTGGCCTCAACGACAACCTCAACGGTGACATCATCA
TCCACGTCGCCTTCCCCCTCGTCGGAGGCAGCTGCCTGCGGCGGCGGCGGCGGCAGCGAGCTGTTCGTCCCACCGATGCC
GTCGAGCTGGTCGTGGGATCAGTTGGAGGGGTTCTTCGGCATCCTCTCGCCGCTCTCGCCGCACCCGCAAATGGGATTCC
CGGAGGTCGCCGTAAACTAATTAAGCGCGCTAATGATCTCTCTAAGCATGATTAATTAGGCGCAATAATCGGCAATTAAT
TAGTGGCTTCTAGTTCTCGACGGCCTTCGCTTTGGACACATCTCAGGAGATTTGGCTTGGAGCAGTGTACTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38982.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis