Browse Element(s) Details


Os.13623.1.S1_at

Description gb:AK120968.1
DB_XREF= gi:37990591
TID=Os.13623.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.13623 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-002-G01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023040I01, full insert sequence.
FL= gb:AK104992.2 gb:AK101038.1 gb:AK120968.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g415509/11Eukaryotic aspartyl protease family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g41500NANA1+23814571..23817473retrotransposon protein, putative, unclassified
LOC_Os01g41510Os.23476.1.A1_at8/111+23825291..23829223Calcineurin B-like protein 4, putative, expressed
LOC_Os01g41516OsAffx.19542.3.S1_x_at5/111+23830700..23832493retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g41522NANA1+23833497..23834608retrotransposon protein, putative, unclassified
LOC_Os01g41530Os.56319.1.S1_at11/111+23836946..23839191F-box domain containing protein, expressed
LOC_Os01g41540OsAffx.2206.1.S1_at11/111+23840209..23840782hypothetical protein
LOC_Os01g41550Os.13623.1.S1_at9/111+23841856..23843623Eukaryotic aspartyl protease family protein, expressed
LOC_Os01g41560OsAffx.23622.1.S1_at11/111+23849278..23850404hypothetical protein
LOC_Os01g41570OsAffx.23623.1.S1_x_at11/111+23857442..23864963PP-loop family protein
LOC_Os01g41570OsAffx.23623.1.S1_at10/111+23857442..23864963PP-loop family protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004194molecular_functionpepsin A activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13623.1.S1_at--913--1031Chr01:23843170..23843194 (25 bp)
AGGTGCCCACCGTGTCGATGCACTT
LOC_Os01g41550
Os.13623.1.S1_at--691--9431Chr01:23843305..23843329 (25 bp)
TCGGGAACATCCAGCAGCAGGGCTT
LOC_Os01g41550
Os.13623.1.S1_at--694--8291Chr01:23843364..23843388 (25 bp)
GGCTTCGTGCCCAAGGGATGCTAGC
LOC_Os01g41550
Os.13623.1.S1_at--793--7971Chr01:23843379..23843403 (25 bp)
GGATGCTAGCTAATTGCGCCTTAAG
LOC_Os01g41550
Os.13623.1.S1_at--469--1571Chr01:23843386..23843410 (25 bp)
AGCTAATTGCGCCTTAAGCCTGCTG
LOC_Os01g41550
Os.13623.1.S1_at--148--2672Chr01:23843401..23843425 (25 bp)
AAGCCTGCTGCTTAATCTAATTAAC
LOC_Os01g41550
Os.13623.1.S1_at--662--7651Chr01:23843428..23843452 (25 bp)
GGGAGTGAGCCTTGTTTAGTCATAA
LOC_Os01g41550
Os.13623.1.S1_at--1087--7971Chr01:23843519..23843543 (25 bp)
GGATGCTGTAAAGCGCTGTGTGCTT
LOC_Os01g41550
Os.13623.1.S1_at--854--9811Chr01:23843592..23843616 (25 bp)
TAAAAATCTCCTTGACCATGTCAGT
LOC_Os01g41550
Os.13623.1.S1_at--195--691Chr01:23843625..23843649 (25 bp)
ATGACTGTCTCTGACTGGCTCGTTT
NONE
Os.13623.1.S1_at--718--9471Chr01:23843634..23843658 (25 bp)
TCTGACTGGCTCGTTTGCTATAGTT
NONE
Target Sequence 
AGGTGCCCACCGTGTCGATGCACTTCGCCGGCGGCGCCGAGGCCGCGCTGCCGCCGGAGAACTACCTGATCCCGGTGGAC
TCGAGGGGCACCTTCTGCTTCGCGTTCGCCGGCACCGACGGCGGCGTCTCCATCATCGGGAACATCCAGCAGCAGGGCTT
CCGCGTGGTGTTCGACGGCGACGGCCAGCGCCTCGGCTTCGTGCCCAAGGGATGCTAGCTAATTGCGCCTTAAGCCTGCT
GCTTAATCTAATTAACGGGGGAGTGAGCCTTGTTTAGTCATAATTAAGTACTTAATTAAGGGTTTGGTTTGATTAAGGTG
GCGAGTGAGTGAGGGAGGGAGAGAGCTTTGGATGCTGTAAAGCGCTGTGTGCTTTGAGGATAAGGCGGTTGAAGGCTGTA
AAACAGTTAAAGTGATGGGTTATAAAAATCTCCTTGACCATGTCAGTNTGATTCNATGACTGTCTCTGACTGGCTCGTTT
GCTATAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13623.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis