Browse Element(s) Details


Os.56319.1.S1_at

Description gb:AK109846.1
DB_XREF= gi:32995055
TID=Os.56319.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56319 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-148-E10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-148-E10, full insert sequence.
FL= gb:AK109846.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4153011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g41490OsAffx.8172.1.S1_at1/111+23812137..23813733retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g41500NANA1+23814571..23817473retrotransposon protein, putative, unclassified
LOC_Os01g41510Os.23476.1.A1_at8/111+23825291..23829223Calcineurin B-like protein 4, putative, expressed
LOC_Os01g41516OsAffx.19542.3.S1_x_at5/111+23830700..23832493retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g41522NANA1+23833497..23834608retrotransposon protein, putative, unclassified
LOC_Os01g41530Os.56319.1.S1_at11/111+23836946..23839191F-box domain containing protein, expressed
LOC_Os01g41540OsAffx.2206.1.S1_at11/111+23840209..23840782hypothetical protein
LOC_Os01g41550Os.13623.1.S1_at9/111+23841856..23843623Eukaryotic aspartyl protease family protein, expressed
LOC_Os01g41560OsAffx.23622.1.S1_at11/111+23849278..23850404hypothetical protein
LOC_Os01g41570OsAffx.23623.1.S1_x_at11/111+23857442..23864963PP-loop family protein
LOC_Os01g41570OsAffx.23623.1.S1_at10/111+23857442..23864963PP-loop family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56319.1.S1_at--760--10831Chr01:23837433..23837457 (25 bp)
TTGGGAATCCCTGGGTTCCTGCGAA
LOC_Os01g41530
Os.56319.1.S1_at--461--5271Chr01:23837411..23837435 (25 bp)
GAATGCCTCAAGTCGCATCTCAAGA
LOC_Os01g41530
Os.56319.1.S1_at--1096--2751Chr01:23837390..23837414 (25 bp)
AAGACAGTCAGCATCCAAGGGTTCC
LOC_Os01g41530
Os.56319.1.S1_at--103--2891Chr01:23837374..23837398 (25 bp)
AAGGGTTCCACACCGAGCGCTATGA
LOC_Os01g41530
Os.56319.1.S1_at--218--7551Chr01:23837300..23837324 (25 bp)
GTGGCCTTCTTCTGCGAGGATAAAG
LOC_Os01g41530
Os.56319.1.S1_at--1087--6151Chr01:23837285..23837309 (25 bp)
GAGGATAAAGTGTGCTTCGCCGCCA
LOC_Os01g41530
Os.56319.1.S1_at--266--2751Chr01:23837222..23837246 (25 bp)
AAGAACCTCGTCCAAGATCGCTGGA
LOC_Os01g41530
Os.56319.1.S1_at--871--1371Chr01:23837191..23837215 (25 bp)
AGAGCGCCATTGATCTGTCTCTCGA
LOC_Os01g41530
Os.56319.1.S1_at--206--10571Chr01:23837159..23837183 (25 bp)
TTCTTCTACGCCGTGGAGAGCTGAT
LOC_Os01g41530
Os.56319.1.S1_at--533--10431Chr01:23837122..23837146 (25 bp)
TTATGGTGTTTTTGTCATCCGACAT
LOC_Os01g41530
Os.56319.1.S1_at--585--10831Chr01:23836959..23836983 (25 bp)
TTGGGCCAAAATCCACAATCCTGTC
LOC_Os01g41530
Target Sequence 
TTGGGAATCCCTGGGTTCCTGCGAATGCCTCAAGTCGCATCTCAAGACAGTCAGCATCCAAGGGTTCCACACCGAGCGCT
ATGAGGTGTTGTGCCTCAAGTACCTCATCTTGGAGGGGGAGGTGCTCGAGACCGTGGCCTTCTTCTGCGAGGATAAAGTG
TGCTTCGCCGCCAAGGACGACGAGGCGGTGGAGATCGAGCTGATGTTTCCCAAGAACCTCGTCCAAGATCGCTGGAGCTT
CCAGAGCGCCATTGATCTGTCTCTCGACGATCCCTTCTTCTACGCCGTGGAGAGCTGATGGGTCTGTGCGTTTATGGTGT
TTTTGTCATCCGACATAGATGGGTTCACAAATCTATGGATGTAGCACTGACATACTAAATTCTTCAGAAATTAACGGTGA
ACTCTGGATGCTAATTTAGTACTAGTTGTTAGGTTCTGGGTTGCGGAAGTACTAAAACTTTGGTGCGTATTGTTTTGGGC
CAAAATCCACAATCCTGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56319.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis