Browse Element(s) Details


Os.13632.1.S1_at

Description gb:AK058345.1
DB_XREF= gi:32968363
TID=Os.13632.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.13632 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033082J04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-014-D12, full insert sequence.
FL= gb:AK058345.1 gb:AK102079.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3177011/11Tetratricopeptide repeat protein 11, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g31730OsAffx.4492.1.S1_at11/115+18394382..18398339Sodium/hydrogen exchanger family protein, expressed
LOC_Os05g31730OsAffx.4492.1.S1_x_at11/115+18394382..18398339Sodium/hydrogen exchanger family protein, expressed
LOC_Os05g31740Os.54911.1.S1_at11/115+18406188..18408080Cytochrome P450 family protein, expressed
LOC_Os05g31750Os.22783.1.S1_s_at11/115+18413191..18414870Annexin family protein, expressed
LOC_Os05g31750Os.38017.1.S1_s_at11/115+18413191..18414870Annexin family protein, expressed
LOC_Os05g31760Os.8259.1.S1_at11/115+18419551..18421971Annexin family protein, expressed
LOC_Os05g31770Os.13632.1.S1_at11/115+18421530..18424750Tetratricopeptide repeat protein 11, putative, expressed
LOC_Os05g31780Os.18281.1.S1_at11/115+18427306..18431560Adaptor complexes medium subunit family protein, expressed
LOC_Os05g31800NANA5+18443340..18444094hypothetical protein
LOC_Os05g31810NANA5+18444499..18444810hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13632.1.S1_at--314--4951Chr05:18423793..18423817 (25 bp)
GCATTATGAGGCTGTCTTGGGCCCT
LOC_Os05g31770
Os.13632.1.S1_at--414--151Chr05:18423625..18423649 (25 bp)
ATTAGGTCAATCCAACAGCCCACTG
LOC_Os05g31770
Os.13632.1.S1_at--725--10151Chr05:18423582..18423606 (25 bp)
TATCTGCTGGCGGTTGGACACTACA
LOC_Os05g31770
Os.13632.1.S1_at--636--2851Chr05:18423538..18423562 (25 bp)
AAGTCGGCAGCTTGTGGACCGTTGT
LOC_Os05g31770
Os.13632.1.S1_at--630--911Chr05:18422391..18422415 (25 bp)
AGGCAGGCTTTGTCTCTCAGGAAGG
LOC_Os05g31770
Os.13632.1.S1_at--1122--271Chr05:18422156..18422180 (25 bp)
ATAGGCATCGCCACAACTGCTGTTG
LOC_Os05g31770
Os.13632.1.S1_at--240--7871Chr05:18422016..18422040 (25 bp)
GGTATTCCAGTCGAGAATCGCCACA
LOC_Os05g31770
Os.13632.1.S1_at--580--6311Chr05:18421970..18421994 (25 bp)
GATGACCATGGTACTCCGGATGCAA
LOC_Os05g31770
Os.13632.1.S1_at--945--651Chr05:18421951..18421975 (25 bp)
ATGCAACATGTACCTTTCCTTTTCT
LOC_Os05g31770
Os.13632.1.S1_at--106--10811Chr05:18421917..18421941 (25 bp)
TTGTCACTAGTTTCAAGCACCTCTG
LOC_Os05g31770
Os.13632.1.S1_at--462--2711Chr05:18421903..18421927 (25 bp)
AAGCACCTCTGGCTTGATTCTGATC
LOC_Os05g31770
Target Sequence 
GCATTATGAGGCTGTCTTGGGCCCTCGTGCATTCCAAGAACCAGGAGGATGTAAATCGTGGAATAGGCATGCTTGAAGCA
TCATTAGGTCAATCCAACAGCCCACTGCAGACTAGGGAGAAGCTATATCTGCTGGCGGTTGGACACTACAGAAATGGTGA
CTACCCAAGAAGTCGGCAGCTTGTGGACCGTTGTTTGGAGATTCAACCTGATTGGAGGCAGGCTTTGTCTCTCAGGAAGG
CTATAGAAGATAAAATTGCCAAAGATGGTCTGATCGGAATAGGCATCGCCACAACTGCTGTTGGACTTCTGGTTGGTGGG
ATTGCAGCTATTGCTGCAAGGAAGAAGTGAGATGATATCTGCTTGCTGATGTAGTAACCAAGTAGATGTTTGGCTTGTTT
GTTCTTTTTTCAATTCGTGGTATTCCAGTCGAGAATCGCCACAGTAATGTGCATAAAACAAATTGATGACCATGGTACTC
CGGATGCAACATGTACCTTTCCTTTTCTNNNNTNNTNTTATTGTCACTAGTTTCAAGCACCTCTGGCTTGATTCTGATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13632.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis