Browse Element(s) Details


Os.13654.1.S1_at

Description gb:AK068851.1
DB_XREF= gi:32978876
TID=Os.13654.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.13654 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-046-A11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013162F01, full insert sequence.
FL= gb:AK104896.1 gb:AK068851.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4023011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g40170Os.5060.1.S1_at11/118+25287041..25288924Cell division control protein 2 homolog D, putative, expressed
LOC_Os08g40170OsAffx.27261.1.S1_at2/118+25287041..25288924Cell division control protein 2 homolog D, putative, expressed
LOC_Os08g40180Os.7600.1.S1_at11/118+25293848..252986563-hydroxy-3-methylglutaryl-coenzyme A reductase 3, putative, expressed
LOC_Os08g40180Os.48518.1.S1_at1/118+25293848..252986563-hydroxy-3-methylglutaryl-coenzyme A reductase 3, putative, expressed
LOC_Os08g40190NANA8+25301590..25303396expressed protein
LOC_Os08g40200OsAffx.6092.1.S1_at11/118+25304354..25308010serine/threonine protein phosphatase, putative, expressed
LOC_Os08g40210NANA8+25308379..25308708expressed protein
LOC_Os08g40220NANA8+25310492..25310781hypothetical protein
LOC_Os08g40230Os.13654.1.S1_at11/118+25311620..25317222expressed protein
LOC_Os08g40240NANA8+25318120..25318545CP12 domain containing protein, expressed
LOC_Os08g40250OsAffx.6093.1.S1_at11/118+25328770..25335292expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13654.1.S1_at--459--1371Chr08:25315916..25315940 (25 bp)
AGAGCTGGGACTTTCACGACATGCC
LOC_Os08g40230
Os.13654.1.S1_at--163--591Chr08:25315936..25315960 (25 bp)
ATGCCTTCCGACGTTTACGTGAGGT
LOC_Os08g40230
Os.13654.1.S1_at--606--1391Chr08:25316870..25316894 (25 bp)
AGACTTAAGGCCAATGCTCAATTCA
LOC_Os08g40230
Os.13654.1.S1_at--870--391Chr08:25316988..25317012 (25 bp)
ATCAGTACGGTCATTTTGCAACAAA
LOC_Os08g40230
Os.13654.1.S1_at--819--9871Chr08:25317063..25317087 (25 bp)
TACATGTGTTGCCTTGTTTGGACGG
LOC_Os08g40230
Os.13654.1.S1_at--55--3911Chr08:25317085..25317109 (25 bp)
CGGCCTGTTAGGTTTATCTTTAGCT
LOC_Os08g40230
Os.13654.1.S1_at--964--5371Chr08:25317110..25317134 (25 bp)
GAAGCTACACTTTTTGAATTTACCG
LOC_Os08g40230
Os.13654.1.S1_at--150--5231Chr08:25317125..25317149 (25 bp)
GAATTTACCGTGACCGAGCAGGCCT
LOC_Os08g40230
Os.13654.1.S1_at--707--5931Chr08:25317140..25317164 (25 bp)
GAGCAGGCCTGTTTACATGATCGCA
LOC_Os08g40230
Os.13654.1.S1_at--576--4951Chr08:25317162..25317186 (25 bp)
GCATAGTGAACTGGCTGTATCCTGA
LOC_Os08g40230
Os.13654.1.S1_at--943--4731Chr08:25317175..25317199 (25 bp)
GCTGTATCCTGATCTTCTCTACAAA
LOC_Os08g40230
Target Sequence 
AGAGCTGGGACTTTCACGACATGCCTTCCGACGTTTACGTGAGGTTGTTGGGAATAGGTACAATTCTGGAAAAGATGAAC
TCACAATAACTAGTGAAAGGTTTGAGCATCGGGAAGAGAACAGGAAAGATTGCTTGAGGACATTGTATGCTGTAGTAGAA
GATGCAAACAAGGCCAATAAGTTGGCTGATGATGCTAGAAATNGCATATGTTAAAAACAGACTTAAGGCCAATGCTCAAT
TCATGGAAAGGTTGAAGGTGAAGACACAGAAATTGAGGGTAGCTGCATAAGGGGCTCCTGGAGCTACACGCTCTGGAACA
ATNCCTCTTTCATGATATCAGTACGGTCATTTTGCAACAAAGGATGCGGCAGTGAGACGTAGAACGGGAGCAAAAATGTT
TTGTTGTAATTTACATGTGTTGCCTTGTTTGGACGGCCTGTTAGGTTTATCTTTAGCTGAAGCTACACTTTTTGAATTTA
CCGTGACCGAGCAGGCCTGTTTACATGATCGCATAGTGAACTGGCTGTATCCTGATCTTCTCTACAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13654.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis