Browse Element(s) Details

Os.5060.1.S1_at

Description

gb:D64036.1
DB_XREF= gi:1944503
GEN=SS224
TID=Os.5060.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.5060 (NCBI UniGene Cluster)
DEF=Rice mRNA for protein cdc2 kinase, complete cds.
PROD=protein cdc2 kinase
FL= gb:AK059682.1 gb:D64036.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os08g40170	11/11	Cell division control protein 2 homolog D, putative, expressed
LOC_Os05g40540	3/11	hypothetical protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os08g40120	OsAffx.17428.1.S1_x_at	10/11	8	+	25262496..25264789	hypothetical protein
LOC_Os08g40120	OsAffx.17428.1.S1_at	10/11	8	+	25262496..25264789	hypothetical protein
LOC_Os08g40130	OsAffx.17429.1.S1_at	11/11	8	+	25266422..25267567	heavy metal-associated domain containing protein
LOC_Os08g40140	Os.24791.1.S1_at	11/11	8	+	25268416..25271796	Geranylgeranyl transferase type II beta subunit, putative, expressed
LOC_Os08g40140	OsAffx.19114.1.S1_x_at	1/11	8	+	25268416..25271796	Geranylgeranyl transferase type II beta subunit, putative, expressed
LOC_Os08g40150	Os.19417.1.S1_a_at	11/11	8	+	25272128..25276260	AT-hook protein 1, putative, expressed
LOC_Os08g40160	Os.11578.1.S1_at	11/11	8	+	25283288..25285949	thylakoid lumen protein, chloroplast precursor, putative, expressed
LOC_Os08g40170	Os.5060.1.S1_at	11/11	8	+	25287041..25288924	Cell division control protein 2 homolog D, putative, expressed
LOC_Os08g40170	OsAffx.27261.1.S1_at	2/11	8	+	25287041..25288924	Cell division control protein 2 homolog D, putative, expressed
LOC_Os08g40180	Os.7600.1.S1_at	11/11	8	+	25293848..25298656	3-hydroxy-3-methylglutaryl-coenzyme A reductase 3, putative, expressed
LOC_Os08g40180	Os.48518.1.S1_at	1/11	8	+	25293848..25298656	3-hydroxy-3-methylglutaryl-coenzyme A reductase 3, putative, expressed
LOC_Os08g40190	NA	NA	8	+	25301590..25303396	expressed protein
LOC_Os08g40200	OsAffx.6092.1.S1_at	11/11	8	+	25304354..25308010	serine/threonine protein phosphatase, putative, expressed
LOC_Os08g40210	NA	NA	8	+	25308379..25308708	expressed protein
LOC_Os08g40220	NA	NA	8	+	25310492..25310781	hypothetical protein
LOC_Os08g40230	Os.13654.1.S1_at	11/11	8	+	25311620..25317222	expressed protein

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0000074	biological_process	regulation of progression through cell cycle
GO:0000086	biological_process	G2/M transition of mitotic cell cycle
GO:0000087	biological_process	M phase of mitotic cell cycle
GO:0000910	biological_process	cytokinesis
GO:0007346	biological_process	regulation of progression through mitotic cell cycle
GO:0009826	biological_process	unidimensional cell growth
GO:0016572	biological_process	histone phosphorylation
GO:0042023	biological_process	DNA endoreduplication
GO:0000307	cellular_component	cyclin-dependent protein kinase holoenzyme complex
GO:0009574	cellular_component	preprophase band
GO:0010005	cellular_component	cortical microtubule (sensu Viridiplantae)
GO:0004674	molecular_function	protein serine/threonine kinase activity
GO:0004693	molecular_function	cyclin-dependent protein kinase activity
GO:0005515	molecular_function	protein binding
GO:0016301	molecular_function	kinase activity
GO:0030332	molecular_function	cyclin binding

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.5060.1.S1_at--450--187	1	Chr08:25287935..25287956 (22 bp)	ACGAGATCCTGACGCTGTGGTACAG	LOC_Os08g40170
Os.5060.1.S1_at--459--495	1	Chr08:25288022..25288135 (25 bp)	GCATTTTTGCTGAGTTGGCCACTAA	LOC_Os08g40170
Os.5060.1.S1_at--120--805	2	Chr08:25288152..25288176 (25 bp)	GGAGATTCCGAGGTTCAGCAGCTTC	LOC_Os08g40170
Os.5060.1.S1_at--527--341	2	Chr08:25288167..25288191 (25 bp)	CAGCAGCTTCTGCACATTTTCAAGT	LOC_Os08g40170
Os.5060.1.S1_at--1157--207	2	Chr08:25288180..25288310 (25 bp)	ACATTTTCAAGTTGCTGGGCACCCC	LOC_Os08g40170
Os.5060.1.S1_at--1028--81	1	Chr08:25288400..25288424 (25 bp)	ATGGTCTCGACGCTGATGCTCTTGA	LOC_Os08g40170
Os.5060.1.S1_at--341--229	1	Chr08:25288598..25288622 (25 bp)	AAATGCTGCAGTACGAGCCGTCGAA	LOC_Os08g40170
Os.5060.1.S1_at--1133--267	1	Chr08:25288621..25288645 (25 bp)	AAGCGGATCTCTGCGAAGAAGGCCA	LOC_Os08g40170
Os.5060.1.S1_at--1028--807	1	Chr08:25288677..25288701 (25 bp)	GGAGCTCTACTGAAGGTCGATTGAT	LOC_Os08g40170
Os.5060.1.S1_at--479--721	1	Chr08:25288692..25288716 (25 bp)	GTCGATTGATGATGTTCACCACCAA	LOC_Os08g40170
Os.5060.1.S1_at--974--1065	1	Chr08:25288805..25288829 (25 bp)	TTCCTGGATGCTGCTTAGTGTGCTT	LOC_Os08g40170

Target Sequence

ACGAGATCCTGACGCTGTGGTACAGGGCTCCCGAGGTTCTTCTTGGCGCGGCACACTACTCCACTCCGGTTGACATCTGG
TCTGTGGGCTGCATTTTTGCTGAGTTGGCCACTAACCAACCTCTTTTCGCTGGAGATTCCGAGGTTCAGCAGCTTCTGCA
CATTTTCAAGTTGCTGGGCACCCCAAATGAGCAAGTTTGGCCAGGAGTGAGCAAGCTACCTAACTGGCACGAGTACCCCC
AGTGGAATCCCTCGAAAGTGTCTGATCTTGTCCATGGTCTCGACGCTGATGCTCTTGATCTTCTTGAGAAAATGCTGCAG
TACGAGCCGTCGAAGCGGATCTCTGCGAAGAAGGCCATGGAGCATCCCTACTTCAACGACGTGAACAAGGAGCTCTACTG
AAGGTCGATTGATGATGTTCACCACCAAGGAAAAAAAAACGTTGTGCGTCTTCGTGACTAGCCTGCCCTGAAGCATTGCT
TTTGCTTCTAGGGGGAAAAGTACTGTTTGTGTCTGTTTCCTGGATGCTGCTTAGTGTGCTT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis