Browse Element(s) Details


Os.19417.1.S1_a_at

Description gb:AK063161.1
DB_XREF= gi:32973179
TID=Os.19417.1
CNT=34
FEA=FLmRNA
TIER=FL+Stack
STK=15
UG=Os.19417 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013112F01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-046-D04, full insert sequence.
FL= gb:AK063161.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4015011/11AT-hook protein 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g40090Os.14329.1.S1_at11/118+25244851..25247749leucine-rich repeat family protein, putative, expressed
LOC_Os08g40100Os.18042.1.S1_at11/118+25252520..25254432expressed protein
LOC_Os08g40100Os.48069.1.S1_at1/118+25252520..25254432expressed protein
LOC_Os08g40110Os.6122.1.S1_at11/118+25255520..25259472N-acyl-L-amino-acid amidohydrolase family protein, expressed
LOC_Os08g40120OsAffx.17428.1.S1_x_at10/118+25262496..25264789hypothetical protein
LOC_Os08g40120OsAffx.17428.1.S1_at10/118+25262496..25264789hypothetical protein
LOC_Os08g40130OsAffx.17429.1.S1_at11/118+25266422..25267567heavy metal-associated domain containing protein
LOC_Os08g40140Os.24791.1.S1_at11/118+25268416..25271796Geranylgeranyl transferase type II beta subunit, putative, expressed
LOC_Os08g40140OsAffx.19114.1.S1_x_at1/118+25268416..25271796Geranylgeranyl transferase type II beta subunit, putative, expressed
LOC_Os08g40150Os.19417.1.S1_a_at11/118+25272128..25276260AT-hook protein 1, putative, expressed
LOC_Os08g40160Os.11578.1.S1_at11/118+25283288..25285949thylakoid lumen protein, chloroplast precursor, putative, expressed
LOC_Os08g40170Os.5060.1.S1_at11/118+25287041..25288924Cell division control protein 2 homolog D, putative, expressed
LOC_Os08g40170OsAffx.27261.1.S1_at2/118+25287041..25288924Cell division control protein 2 homolog D, putative, expressed
LOC_Os08g40180Os.7600.1.S1_at11/118+25293848..252986563-hydroxy-3-methylglutaryl-coenzyme A reductase 3, putative, expressed
LOC_Os08g40180Os.48518.1.S1_at1/118+25293848..252986563-hydroxy-3-methylglutaryl-coenzyme A reductase 3, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
GO:0005737cellular_componentcytoplasm
GO:0005739cellular_componentmitochondrion
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19417.1.S1_a_at--967--291Chr08:25273028..25273048 (21 bp)
ATAGCAGCTACTCCAGTCCAGATTG
LOC_Os08g40150
Os.19417.1.S1_a_at--1117--1651Chr08:25272563..25272587 (25 bp)
AGCCCACCTTCAAGAGGCACATTGA
LOC_Os08g40150
Os.19417.1.S1_a_at--1004--4291Chr08:25272532..25272556 (25 bp)
CCTCAGGTGGAGCTGGAAGCCCATT
LOC_Os08g40150
Os.19417.1.S1_a_at--129--8191Chr08:25272518..25272542 (25 bp)
GGAAGCCCATTGCATCCAGGCATTG
LOC_Os08g40150
Os.19417.1.S1_a_at--453--2291Chr08:25272438..25272462 (25 bp)
AAATGAGACCTTTTCATCCTTCACC
LOC_Os08g40150
Os.19417.1.S1_a_at--246--3291Chr08:25272414..25272438 (25 bp)
CAAACCTGGACTCTGAATCTCTGAT
LOC_Os08g40150
Os.19417.1.S1_a_at--833--6931Chr08:25272354..25272378 (25 bp)
GTAGTAGCAACCGTTGCCACACGTT
LOC_Os08g40150
Os.19417.1.S1_a_at--24--4031Chr08:25272333..25272357 (25 bp)
CGTTTTCTCTAACTAGCTCCTATGA
LOC_Os08g40150
Os.19417.1.S1_a_at--158--8751Chr08:25272259..25272283 (25 bp)
TGTAGCTGTCGTGTAGGTTTCACCC
LOC_Os08g40150
Os.19417.1.S1_a_at--502--7871Chr08:25272244..25272268 (25 bp)
GGTTTCACCCTGGATTTATTATGTA
LOC_Os08g40150
Os.19417.1.S1_a_at--379--6791Chr08:25272181..25272205 (25 bp)
GTTATCCTAATGTCCTATATGCAAT
LOC_Os08g40150
Target Sequence 
ATAGCAGCTACTCCAGTCCAGATTGTGGTTGGAAGCTTCAATTCTGAAGGGAAAAAGGAGCCAAAGCAGCATGCTCATTC
AGAACCCGCATCCGCGCCATCGAAAGCCGTGCCGACGGCCGGGATGGGACCCAACAGCCCACCTTCAAGAGGCACATTGA
GTGAATCCTCAGGTGGAGCTGGAAGCCCATTGCATCCAGGCATTGCTCCTCCCAGCAGCAACAGCCAGCCGCCATTCTTG
TNTAGCATGCCATGGAAATGAAATGAGACCTTTTCATCCTTCACCAAACCTGGACTCTGAATCTCTGATAGACTTTGTCG
ATGAACTGCATCTTCTGCCAGAAAGTAGTAGCAACCGTTGCCACACGTTTTCTCTAACTAGCTCCTATGATGTAGTGTAA
ATCTGAAGTTTAATTAGGGGAGAATTTGTAGCTGGTAAGTGTAGCTGTCGTGTAGGTTTCACCCTGGATTTATTATGTAT
TAGGTAGGTAGTGGTATCTTGAGAGACATATGATCATGTTATCCTAATGTCCTATATGCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19417.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis