Browse Element(s) Details


Os.6122.1.S1_at

Description gb:CF310316
DB_XREF= gi:33682077
DB_XREF=ABF--04-O09.g1
CLONE=ABF--04-O09
TID=Os.6122.1
CNT=18
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.6122 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein pir:T05649 (A.thaliana) T05649 hypothetical protein F20D10.340 - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4011011/11N-acyl-L-amino-acid amidohydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g40050Os.49866.1.S1_at11/118+25227626..25230734retrotransposon protein, putative, unclassified
LOC_Os08g40060Os.49470.1.S1_at11/118+25233344..25234383expressed protein
LOC_Os08g40070NANA8+25237521..25238194hypothetical protein
LOC_Os08g40080NANA8+25241787..25242433expressed protein
LOC_Os08g40090Os.14329.1.S1_at11/118+25244851..25247749leucine-rich repeat family protein, putative, expressed
LOC_Os08g40100Os.18042.1.S1_at11/118+25252520..25254432expressed protein
LOC_Os08g40100Os.48069.1.S1_at1/118+25252520..25254432expressed protein
LOC_Os08g40110Os.6122.1.S1_at11/118+25255520..25259472N-acyl-L-amino-acid amidohydrolase family protein, expressed
LOC_Os08g40120OsAffx.17428.1.S1_x_at10/118+25262496..25264789hypothetical protein
LOC_Os08g40120OsAffx.17428.1.S1_at10/118+25262496..25264789hypothetical protein
LOC_Os08g40130OsAffx.17429.1.S1_at11/118+25266422..25267567heavy metal-associated domain containing protein
LOC_Os08g40140Os.24791.1.S1_at11/118+25268416..25271796Geranylgeranyl transferase type II beta subunit, putative, expressed
LOC_Os08g40140OsAffx.19114.1.S1_x_at1/118+25268416..25271796Geranylgeranyl transferase type II beta subunit, putative, expressed
LOC_Os08g40150Os.19417.1.S1_a_at11/118+25272128..25276260AT-hook protein 1, putative, expressed
LOC_Os08g40160Os.11578.1.S1_at11/118+25283288..25285949thylakoid lumen protein, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004046molecular_functionaminoacylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6122.1.S1_at--1130--1951Chr08:25256289..25256313 (25 bp)
ACTGATGCTCGTTACTTTCGGGTGC
LOC_Os08g40110
Os.6122.1.S1_at--107--10311Chr08:25256274..25256298 (25 bp)
TTTCGGGTGCTTGGGATACCAGCAT
LOC_Os08g40110
Os.6122.1.S1_at--925--1711Chr08:25256257..25256281 (25 bp)
ACCAGCATTTGGTTTTTCTCCAATG
LOC_Os08g40110
Os.6122.1.S1_at--488--2411Chr08:25256230..25256254 (25 bp)
AAACACACCGATATTGCTCCATGAT
LOC_Os08g40110
Os.6122.1.S1_at--992--9531Chr08:25255905..25255929 (25 bp)
TCTATCATCAGGACATTGGCCACTC
LOC_Os08g40110
Os.6122.1.S1_at--791--8451Chr08:25255889..25255913 (25 bp)
TGGCCACTCTTAAGGACAGCAATGT
LOC_Os08g40110
Os.6122.1.S1_at--661--8711Chr08:25255867..25255891 (25 bp)
TGTCGACTACGAATCCAGGGCAGAG
LOC_Os08g40110
Os.6122.1.S1_at--955--371Chr08:25255761..25255785 (25 bp)
ATCAACTGTGTTTTCTTACTGCTCC
LOC_Os08g40110
Os.6122.1.S1_at--71--3631Chr08:25255747..25255771 (25 bp)
CTTACTGCTCCTAGGGTGGAATCGA
LOC_Os08g40110
Os.6122.1.S1_at--1046--3431Chr08:25255649..25255673 (25 bp)
CAGTTAACCTGTATGCTTTTCGCAA
LOC_Os08g40110
Os.6122.1.S1_at--120--651Chr08:25255608..25255632 (25 bp)
ATGCATCATTGGCTCACTGCTGTAA
LOC_Os08g40110
Target Sequence 
ACTGATGCTCGTTACTTTCGGGTGCTTGGGATACCAGCATTTGGTTTTTCTCCAATGACAAACACACCGATATTGCTCCA
TGATCACAATGAGTTTCTGAGCAAAGATGAGTACCTCAAAGGGATTGGGATATACGAGTCTATCATCAGGACATTGGCCA
CTCTTAAGGACAGCAATGTCGACTACGAATCCAGGGCAGAGCTATGAAGAAAATGTTTAGGCAAAACCTGATACTGCCAT
AATTCTTGCAATCAGATGGAGCACAGAAACATGTTTCGGCAAATCAACTGTGTTTTCTTACTGCTCCTAGGGTGGAATCG
AAACTTCGAACACGATCGTTGTAAATTTTCATTGAAACCTGTTTAGATTTTAGAATAAATTGATCCTGCATTTGCAGTTA
ACCTGTATGCTTTTCGCAACTGCTGGTGCTGCTTGATGCATCATTGGCTCACTGCTGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6122.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis