Browse Element(s) Details


Os.49866.1.S1_at

Description gb:AK112104.1
DB_XREF= gi:37988767
TID=Os.49866.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49866 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-110-E05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-110-E05, full insert sequence.
FL= gb:AK112104.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4005011/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g40000OsAffx.29603.1.S1_at11/118+25204174..25204626hypothetical protein
LOC_Os08g40010Os.52786.1.S1_at10/118+25208257..25211106expressed protein
LOC_Os08g40020Os.55143.1.S1_at11/118+25211862..25213493selenium binding protein, putative, expressed
LOC_Os08g40030OsAffx.6090.1.S1_at11/118+25219037..25220910No apical meristem protein
LOC_Os08g40030Os.51926.1.S1_x_at1/118+25219037..25220910No apical meristem protein
LOC_Os08g40040OsAffx.6091.1.S1_at11/118+25221954..25227290hypothetical protein
LOC_Os08g40050Os.49866.1.S1_at11/118+25227626..25230734retrotransposon protein, putative, unclassified
LOC_Os08g40060Os.49470.1.S1_at11/118+25233344..25234383expressed protein
LOC_Os08g40070NANA8+25237521..25238194hypothetical protein
LOC_Os08g40080NANA8+25241787..25242433expressed protein
LOC_Os08g40090Os.14329.1.S1_at11/118+25244851..25247749leucine-rich repeat family protein, putative, expressed
LOC_Os08g40100Os.18042.1.S1_at11/118+25252520..25254432expressed protein
LOC_Os08g40100Os.48069.1.S1_at1/118+25252520..25254432expressed protein
LOC_Os08g40110Os.6122.1.S1_at11/118+25255520..25259472N-acyl-L-amino-acid amidohydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49866.1.S1_at--245--3651Chr08:25228475..25228499 (25 bp)
CTTCGTTCTGGCATGACTGTTGGTA
LOC_Os08g40050
Os.49866.1.S1_at--203--6731Chr08:25228414..25228438 (25 bp)
GTTCTCTCATGCTCTCAACAGGGAA
LOC_Os08g40050
Os.49866.1.S1_at--939--5351Chr08:25228392..25228416 (25 bp)
GAAGCAACAGTTGCGGTGTTCCTCT
LOC_Os08g40050
Os.49866.1.S1_at--1150--7411Chr08:25228377..25228401 (25 bp)
GTGTTCCTCTCGAAGCCAATTGAAG
LOC_Os08g40050
Os.49866.1.S1_at--750--7051Chr08:25228271..25228295 (25 bp)
GTAACTCTACTGATCTATGTCCGTC
LOC_Os08g40050
Os.49866.1.S1_at--636--271Chr08:25228196..25228220 (25 bp)
ATATGGGCCTACCTCTGTGCAAGAA
LOC_Os08g40050
Os.49866.1.S1_at--1--6011Chr08:25228138..25228162 (25 bp)
GAGAGTACAATTCTTCGCCTGGCTT
LOC_Os08g40050
Os.49866.1.S1_at--155--5491Chr08:25228069..25228093 (25 bp)
GAACATTGTTCCAACAGCCGGGTGC
LOC_Os08g40050
Os.49866.1.S1_at--1061--8931Chr08:25228027..25228051 (25 bp)
TGACGAAACTGCAACTCATCTCTTT
LOC_Os08g40050
Os.49866.1.S1_at--1077--1371Chr08:25227972..25227996 (25 bp)
AGAGCCTTGCGTACATCTGTTGTTT
LOC_Os08g40050
Os.49866.1.S1_at--14--6771Chr08:25227942..25227966 (25 bp)
GTTCAAGATCTTGCTGACCTCGTTG
LOC_Os08g40050
Target Sequence 
CTTCGTTCTGGCATGACTGTTGGTATGGTTCGAGTACTTTCAAAGATCGATTTGCTCCCCTGTTCTCTCATGCTCTCAAC
AGGGAAGCAACAGTTGCGGTGTTCCTCTCGAAGCCAATTGAAGATCAGTTCGCCCCCAGGCTGTCATCCACTGCTGAAAC
TCAATTAGCGAGATTGAGAGAGATGCTACAAAACTTCTACCTCAGTAACTCTACTGATCTATGTCCGTCGCGTGATGCTC
CCGGGATCCTTCGCACAAAGTTTATCTATTCTTCTACTCATATGGGCCTACCTCTGTGCAAGAACTGGCGCTTCATCTGG
GACAATCGAGCTCCGCCGAGAGTACAATTCTTCGCCTGGCTTCTAGCTAAGGATCGGCTCCCTACCAAGGCTAATCTGCA
CAAGAAGAACATTGTTCCAACAGCCGGGTGCATCGTCTGCAACTGTGCTGACGAAACTGCAACTCATCTCTTTCTCCAAT
GCCAATTCGCTCAGGAATTCTGGAGAGCCTTGCGTACATCTGTTGTTTCGAATGTTCAAGATCTTGCTGACCTCGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49866.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis