Browse Element(s) Details


OsAffx.6091.1.S1_at

Description tigr:9636.m04050
TID=OsAffx.6091.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4004011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g39990Os.49184.1.S1_at11/118+25200143..25201590expressed protein
LOC_Os08g40000OsAffx.29603.1.S1_at11/118+25204174..25204626hypothetical protein
LOC_Os08g40010Os.52786.1.S1_at10/118+25208257..25211106expressed protein
LOC_Os08g40020Os.55143.1.S1_at11/118+25211862..25213493selenium binding protein, putative, expressed
LOC_Os08g40030OsAffx.6090.1.S1_at11/118+25219037..25220910No apical meristem protein
LOC_Os08g40030Os.51926.1.S1_x_at1/118+25219037..25220910No apical meristem protein
LOC_Os08g40040OsAffx.6091.1.S1_at11/118+25221954..25227290hypothetical protein
LOC_Os08g40050Os.49866.1.S1_at11/118+25227626..25230734retrotransposon protein, putative, unclassified
LOC_Os08g40060Os.49470.1.S1_at11/118+25233344..25234383expressed protein
LOC_Os08g40070NANA8+25237521..25238194hypothetical protein
LOC_Os08g40080NANA8+25241787..25242433expressed protein
LOC_Os08g40090Os.14329.1.S1_at11/118+25244851..25247749leucine-rich repeat family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6091.1.S1_at--544--2671Chr08:25223543..25223567 (25 bp)
AAGCGGTAGGCGTTGGTCATCAAAC
LOC_Os08g40040
OsAffx.6091.1.S1_at--1117--7491Chr08:25223495..25223519 (25 bp)
GTGGTGCGGATTTGGCTGTCAACAA
LOC_Os08g40040
OsAffx.6091.1.S1_at--768--2871Chr08:25223450..25223474 (25 bp)
AAGTGGATTGGAGGCTGCCCGCCAT
LOC_Os08g40040
OsAffx.6091.1.S1_at--668--6251Chr08:25223406..25223430 (25 bp)
GATGGTCGTCGATCTTCACATTGTG
LOC_Os08g40040
OsAffx.6091.1.S1_at--952--9691Chr08:25223391..25223415 (25 bp)
TCACATTGTGTCGATTCGCTGTCAC
LOC_Os08g40040
OsAffx.6091.1.S1_at--939--8811Chr08:25223354..25223378 (25 bp)
TGTTGTCAACACCTAGATTTCTCCC
LOC_Os08g40040
OsAffx.6091.1.S1_at--534--1251Chr08:25223340..25223364 (25 bp)
AGATTTCTCCCCTTGAAGGACTGTA
LOC_Os08g40040
OsAffx.6091.1.S1_at--267--6771Chr08:25223297..25223321 (25 bp)
GTTACTTCATTGCTTCCTCAATTTC
LOC_Os08g40040
OsAffx.6091.1.S1_at--165--3331Chr08:25223265..25223289 (25 bp)
CACTCGACATTGGTATTGGCTTCTC
LOC_Os08g40040
OsAffx.6091.1.S1_at--112--1692Chr08:25223225..25223249 (25 bp)
AGCCTTTGGTTCATGGCCATGGTAA
LOC_Os08g40040
OsAffx.6091.1.S1_at--68--9831Chr08:25223203..25223227 (25 bp)
TAACAGATGGGTTGTCCGCATCCAC
LOC_Os08g40040
Target Sequence 
AAGCGGTAGGCGTTGGTCATCAAACTAGGACGGCGAGGAGGAAGGGTAGTGGTGCGGATTTGGCTGTCAACAAGGTTAAA
AACGATAACCGTCAAGTGGATTGGAGGCTGCCCGCCATCAAGGGGCCTCAAAGAGGTGATGGTCGTCGATCTTCACATTG
TGTCGATTCGCTGTCACCTGGCGATGGCGTGTTGTCAACACCTAGATTTCTCCCCTTGAAGGACTGTAAAATGGTGCAAA
TATCATGTTACTTCATTGCTTCCTCAATTTCCACTCTACACTCGACATTGGTATTGGCTTCTCCCCGCTCTGGGCTCCAG
CCTTTGGTTCATGGCCATGGTAACAGATGGGTTGTCCGCATCCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6091.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis