Browse Element(s) Details


OsAffx.29603.1.S1_at

Description tigr:9636.m04046
TID=OsAffx.29603.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4000011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g39950Os.24908.1.S1_at11/118+25180701..25185727potassium uptake protein, expressed
LOC_Os08g39960Os.52809.1.S1_at11/118+25186185..25187874NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os08g39970Os.19508.1.S1_at11/118+25188689..25192696ENT domain containing protein, expressed
LOC_Os08g39980Os.57192.1.S1_x_at11/118+25193178..25196517Bromodomain containing protein, expressed
LOC_Os08g39980Os.57192.1.S1_at11/118+25193178..25196517Bromodomain containing protein, expressed
LOC_Os08g39980Os.54007.1.S1_s_at11/118+25193178..25196517Bromodomain containing protein, expressed
LOC_Os08g39990Os.49184.1.S1_at11/118+25200143..25201590expressed protein
LOC_Os08g40000OsAffx.29603.1.S1_at11/118+25204174..25204626hypothetical protein
LOC_Os08g40010Os.52786.1.S1_at10/118+25208257..25211106expressed protein
LOC_Os08g40020Os.55143.1.S1_at11/118+25211862..25213493selenium binding protein, putative, expressed
LOC_Os08g40030OsAffx.6090.1.S1_at11/118+25219037..25220910No apical meristem protein
LOC_Os08g40030Os.51926.1.S1_x_at1/118+25219037..25220910No apical meristem protein
LOC_Os08g40040OsAffx.6091.1.S1_at11/118+25221954..25227290hypothetical protein
LOC_Os08g40050Os.49866.1.S1_at11/118+25227626..25230734retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29603.1.S1_at--487--1051Chr08:25204555..25204579 (25 bp)
AGGTGGCACAGAGGGCTGGCGTCGG
LOC_Os08g40000
OsAffx.29603.1.S1_at--792--9351Chr08:25204508..25204532 (25 bp)
TCGACGGCGTCTTCGACAGCAAAAC
LOC_Os08g40000
OsAffx.29603.1.S1_at--232--8371Chr08:25204503..25204527 (25 bp)
GGCGTCTTCGACAGCAAAACACGAT
LOC_Os08g40000
OsAffx.29603.1.S1_at--907--4091Chr08:25204495..25204519 (25 bp)
CGACAGCAAAACACGATGGCGGAGG
LOC_Os08g40000
OsAffx.29603.1.S1_at--912--7531Chr08:25204283..25204307 (25 bp)
GGGCCCACAAATGGCTAGGCCTTTT
LOC_Os08g40000
OsAffx.29603.1.S1_at--1028--3291Chr08:25204278..25204302 (25 bp)
CACAAATGGCTAGGCCTTTTTGGCT
LOC_Os08g40000
OsAffx.29603.1.S1_at--509--3291Chr08:25204250..25204274 (25 bp)
CAAATTTGGCCTGCGCGAGGAGCAC
LOC_Os08g40000
OsAffx.29603.1.S1_at--654--4471Chr08:25204242..25204266 (25 bp)
GCCTGCGCGAGGAGCACCTTGGCCA
LOC_Os08g40000
OsAffx.29603.1.S1_at--1103--1671Chr08:25204218..25204242 (25 bp)
AGCCGGATGGCTTGGCCTGTCTATT
LOC_Os08g40000
OsAffx.29603.1.S1_at--402--3611Chr08:25204208..25204232 (25 bp)
CTTGGCCTGTCTATTGGAGCACGAA
LOC_Os08g40000
OsAffx.29603.1.S1_at--719--4471Chr08:25204204..25204228 (25 bp)
GCCTGTCTATTGGAGCACGAATTTT
LOC_Os08g40000
Target Sequence 
AGGTGGCACAGAGGGCTGGCGTCGGCGGCAAAAGACGACGGCGGTGGTCGACGGCGTCTTCGACAGCAAAACACGATGGC
GGAGGGGCGGCCCTGGCCGAGAAGACAACGGCGGAGGGGTGGCGCACAGGGGCGGCACCGGCGGAGGAGCGACACAGAGG
AGTGGCGCCGGCGGAAAGATGCGCCGGCGTGCTGGATCTGGGGGAGCGGAGGAGAGGATCAGTGGGAGTAGTACATGGGA
GGGAGAGAGAGGAAAAGCGTGGGACATGCGTGGGGCCCACAAATGGCTAGGCCTTTTTGGCTGGCCAAATTTGGCCTGCG
CGAGGAGCACCTTGGCCAGCCGGATGGCTTGGCCTGTCTATTGGAGCACGAATTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29603.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis