Browse Element(s) Details


Os.55143.1.S1_at

Description gb:AK107578.1
DB_XREF= gi:32992787
TID=Os.55143.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55143 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-130-D12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-130-D12, full insert sequence.
FL= gb:AK107578.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4002011/11selenium binding protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g39960Os.52809.1.S1_at11/118+25186185..25187874NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os08g39970Os.19508.1.S1_at11/118+25188689..25192696ENT domain containing protein, expressed
LOC_Os08g39980Os.57192.1.S1_x_at11/118+25193178..25196517Bromodomain containing protein, expressed
LOC_Os08g39980Os.57192.1.S1_at11/118+25193178..25196517Bromodomain containing protein, expressed
LOC_Os08g39980Os.54007.1.S1_s_at11/118+25193178..25196517Bromodomain containing protein, expressed
LOC_Os08g39990Os.49184.1.S1_at11/118+25200143..25201590expressed protein
LOC_Os08g40000OsAffx.29603.1.S1_at11/118+25204174..25204626hypothetical protein
LOC_Os08g40010Os.52786.1.S1_at10/118+25208257..25211106expressed protein
LOC_Os08g40020Os.55143.1.S1_at11/118+25211862..25213493selenium binding protein, putative, expressed
LOC_Os08g40030OsAffx.6090.1.S1_at11/118+25219037..25220910No apical meristem protein
LOC_Os08g40030Os.51926.1.S1_x_at1/118+25219037..25220910No apical meristem protein
LOC_Os08g40040OsAffx.6091.1.S1_at11/118+25221954..25227290hypothetical protein
LOC_Os08g40050Os.49866.1.S1_at11/118+25227626..25230734retrotransposon protein, putative, unclassified
LOC_Os08g40060Os.49470.1.S1_at11/118+25233344..25234383expressed protein
LOC_Os08g40070NANA8+25237521..25238194hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55143.1.S1_at--1056--611Chr08:25212930..25212954 (25 bp)
ATGCTGTGCAACTCTTCAACCAAAT
LOC_Os08g40020
Os.55143.1.S1_at--895--1531Chr08:25212957..25212981 (25 bp)
AGCATGGTGGTGTTGTTCCGGATCA
LOC_Os08g40020
Os.55143.1.S1_at--7--8771Chr08:25212991..25213015 (25 bp)
TGTAGGTGTTCTTACTGCTTGCAGC
LOC_Os08g40020
Os.55143.1.S1_at--818--5511Chr08:25213041..25213065 (25 bp)
GAAAATACTTTGACTCCATGTGGAA
LOC_Os08g40020
Os.55143.1.S1_at--782--8271Chr08:25213073..25213097 (25 bp)
GGCATCAGGCCAACAATCAAACATT
LOC_Os08g40020
Os.55143.1.S1_at--375--731Chr08:25213106..25213130 (25 bp)
ATGATTGATCTCTTCAGTCGTGCTG
LOC_Os08g40020
Os.55143.1.S1_at--434--9651Chr08:25213119..25213143 (25 bp)
TCAGTCGTGCTGGTCGATTGGCAGA
LOC_Os08g40020
Os.55143.1.S1_at--563--2991Chr08:25213162..25213186 (25 bp)
AATGATGCCTATTCAACCCAGTGTC
LOC_Os08g40020
Os.55143.1.S1_at--969--1531Chr08:25213269..25213293 (25 bp)
AGCTTAATCCTCAGTTTGGCGCAAT
LOC_Os08g40020
Os.55143.1.S1_at--557--7311Chr08:25213423..25213447 (25 bp)
GTGCTCCTGAATATAGTTTCCTCTA
LOC_Os08g40020
Os.55143.1.S1_at--438--6851Chr08:25213438..25213462 (25 bp)
GTTTCCTCTAGCATCTGTCTATGGA
LOC_Os08g40020
Target Sequence 
ATGCTGTGCAACTCTTCAACCAAATGCAGCATGGTGGTGTTGTTCCGGATCATGTTGCATTTGTAGGTGTTCTTACTGCT
TGCAGCCATGCTGGGATGGTAGACGAAGCAAGAAAATACTTTGACTCCATGTGGAATCATTATGGCATCAGGCCAACAAT
CAAACATTATGGTTGTATGATTGATCTCTTCAGTCGTGCTGGTCGATTGGCAGAGGCTGAGGGAATGATGCAAATGATGC
CTATTCAACCCAGTGTCACCATGTGGGGAAGCATGATGAATGGTTGCAAGGTACATGGCAGGGCTGATATTGCTGAGAGG
GTAGGAAGGCAGGTTGCTGAGCTTAATCCTCAGTTTGGCGCAATATATGTGATAATGTCCAATATATATGCGGAGATTGG
TAGGTGGCATGCAGTGGAGCACACCAGGAGATTGATGTGGCAGACTGGATTGAAGAAAATTGTAGGCTCAAGTGGCACTG
AAGTGCAAATGTTGTGCTCCTGAATATAGTTTCCTCTAGCATCTGTCTATGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55143.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis