Browse Element(s) Details


Os.52809.1.S1_at

Description gb:AK069393.1
DB_XREF= gi:32979417
TID=Os.52809.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52809 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023012H05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023012H05, full insert sequence.
FL= gb:AK069393.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3996011/11NAD dependent epimerase/dehydratase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g39920Os.27691.2.S1_x_at2/118+25160347..25161312retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g39920Os.27691.1.S1_x_at2/118+25160347..25161312retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g39930OsAffx.17425.1.S1_at11/118+25169117..25169446expressed protein
LOC_Os08g39940OsAffx.17426.1.S1_at11/118+25176585..25178901Leucine Rich Repeat family protein
LOC_Os08g39950Os.24908.1.S1_at11/118+25180701..25185727potassium uptake protein, expressed
LOC_Os08g39960Os.52809.1.S1_at11/118+25186185..25187874NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os08g39970Os.19508.1.S1_at11/118+25188689..25192696ENT domain containing protein, expressed
LOC_Os08g39980Os.57192.1.S1_x_at11/118+25193178..25196517Bromodomain containing protein, expressed
LOC_Os08g39980Os.57192.1.S1_at11/118+25193178..25196517Bromodomain containing protein, expressed
LOC_Os08g39980Os.54007.1.S1_s_at11/118+25193178..25196517Bromodomain containing protein, expressed
LOC_Os08g39990Os.49184.1.S1_at11/118+25200143..25201590expressed protein
LOC_Os08g40000OsAffx.29603.1.S1_at11/118+25204174..25204626hypothetical protein
LOC_Os08g40010Os.52786.1.S1_at10/118+25208257..25211106expressed protein
LOC_Os08g40020Os.55143.1.S1_at11/118+25211862..25213493selenium binding protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52809.1.S1_at--575--7451Chr08:25186855..25186879 (25 bp)
GTGTGCACTCACCATTGGATTGGCC
LOC_Os08g39960
Os.52809.1.S1_at--560--2371Chr08:25186800..25186824 (25 bp)
AAACCTCACAGGATCATGGCTCGTC
LOC_Os08g39960
Os.52809.1.S1_at--1082--8471Chr08:25186784..25186808 (25 bp)
TGGCTCGTCGCCAAGCATGTATGTA
LOC_Os08g39960
Os.52809.1.S1_at--739--5791Chr08:25186759..25186783 (25 bp)
GACGCATGCGTGATGCCAAGCTAAA
LOC_Os08g39960
Os.52809.1.S1_at--743--131Chr08:25186724..25186748 (25 bp)
ATTAACATTTCCTCTGTTTCTGGTC
LOC_Os08g39960
Os.52809.1.S1_at--479--6831Chr08:25186709..25186733 (25 bp)
GTTTCTGGTCTTAACCGTGGTCATC
LOC_Os08g39960
Os.52809.1.S1_at--1081--3211Chr08:25186656..25186680 (25 bp)
CAAGTCTGCCATGCATTATGCCACA
LOC_Os08g39960
Os.52809.1.S1_at--583--351Chr08:25186473..25186497 (25 bp)
ATAACCGCTCCTCTATTGCAAAAGA
LOC_Os08g39960
Os.52809.1.S1_at--326--8251Chr08:25186401..25186425 (25 bp)
GGCACTACTGATCCAGCATTGACGT
LOC_Os08g39960
Os.52809.1.S1_at--191--7371Chr08:25186338..25186362 (25 bp)
GTGACTGGCAACATCTTCATTGTAG
LOC_Os08g39960
Os.52809.1.S1_at--151--9591Chr08:25186322..25186346 (25 bp)
TCATTGTAGATTCTGGTGCCACCTT
LOC_Os08g39960
Target Sequence 
GTGTGCACTCACCATTGGATTGGCCTGAGGATGAATGGGAGACACTTATCAAGACAAACCTCACAGGATCATGGCTCGTC
GCCAAGCATGTATGTAGACGCATGCGTGATGCCAAGCTAAAGGGTTCAGTAATTAACATTTCCTCTGTTTCTGGTCTTAA
CCGTGGTCATCTGCCTGGCTCCACTGGATACGCAGCTTCCAAGTCTGCCATGCATTATGCCACAAAGCTAATGGCTTTGG
AATTAGGAGCATATGGCATTAGAGTGAACTCAATAGCACCTGGAATCTTCAAGTCAGAGATAACCGCTCCTCTATTGCAA
AAGAAATGGTTGAGCACTGTTGTTTCAAAGATAGTGCCACTTAAGACTCATGGCACTACTGATCCAGCATTGACGTCGCT
GGTTCGTTTTCTGATCCATGAAACATCATCATATGTGACTGGCAACATCTTCATTGTAGATTCTGGTGCCACCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52809.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis