Browse Element(s) Details


Os.54007.1.S1_s_at

Description gb:AK101254.1
DB_XREF= gi:32986463
TID=Os.54007.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54007 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033032F20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033032F20, full insert sequence.
FL= gb:AK101254.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3998011/11Bromodomain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g39930OsAffx.17425.1.S1_at11/118+25169117..25169446expressed protein
LOC_Os08g39940OsAffx.17426.1.S1_at11/118+25176585..25178901Leucine Rich Repeat family protein
LOC_Os08g39950Os.24908.1.S1_at11/118+25180701..25185727potassium uptake protein, expressed
LOC_Os08g39960Os.52809.1.S1_at11/118+25186185..25187874NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os08g39970Os.19508.1.S1_at11/118+25188689..25192696ENT domain containing protein, expressed
LOC_Os08g39980Os.57192.1.S1_x_at11/118+25193178..25196517Bromodomain containing protein, expressed
LOC_Os08g39980Os.57192.1.S1_at11/118+25193178..25196517Bromodomain containing protein, expressed
LOC_Os08g39980Os.54007.1.S1_s_at11/118+25193178..25196517Bromodomain containing protein, expressed
LOC_Os08g39990Os.49184.1.S1_at11/118+25200143..25201590expressed protein
LOC_Os08g40000OsAffx.29603.1.S1_at11/118+25204174..25204626hypothetical protein
LOC_Os08g40010Os.52786.1.S1_at10/118+25208257..25211106expressed protein
LOC_Os08g40020Os.55143.1.S1_at11/118+25211862..25213493selenium binding protein, putative, expressed
LOC_Os08g40030OsAffx.6090.1.S1_at11/118+25219037..25220910No apical meristem protein
LOC_Os08g40030Os.51926.1.S1_x_at1/118+25219037..25220910No apical meristem protein

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54007.1.S1_s_at--472--3791Chr08:25193638..25193662 (25 bp)
CTCGACGCCACCAGGGAGGAGGATC
LOC_Os08g39980
Os.54007.1.S1_s_at--33--8111Chr08:25193554..25193578 (25 bp)
GGACGACAAGCCGACCAGGAAGCGC
LOC_Os08g39980
Os.54007.1.S1_s_at--1154--2851Chr08:25193488..25193512 (25 bp)
AAGGCTGCGGGTGTAAATGTTTGTA
LOC_Os08g39980
Os.54007.1.S1_s_at--196--7431Chr08:25193430..25193454 (25 bp)
GTGTTTTGGCGCCAATTGTTGTAGC
LOC_Os08g39980
Os.54007.1.S1_s_at--862--10791Chr08:25193387..25193411 (25 bp)
TTGTTGCTTTTTGGCGGGAGATGAA
LOC_Os08g39980
Os.54007.1.S1_s_at--132--4051Chr08:25193362..25193386 (25 bp)
CGATGGAACATCTGGTTTCACTCTC
LOC_Os08g39980
Os.54007.1.S1_s_at--1032--3651Chr08:25193285..25193309 (25 bp)
CTTAAGGCTGGTTTTGTAGGATATG
LOC_Os08g39980
Os.54007.1.S1_s_at--81--10271Chr08:25193258..25193282 (25 bp)
TTTGACTGGATTCTGTAACCTACAC
LOC_Os08g39980
Os.54007.1.S1_s_at--922--9791Chr08:25193243..25193267 (25 bp)
TAACCTACACTGAATCAGGACACAT
LOC_Os08g39980
Os.54007.1.S1_s_at--411--5631Chr08:25193225..25193249 (25 bp)
GACACATTGGTGTCAATATGGCATG
LOC_Os08g39980
Os.54007.1.S1_s_at--718--10111Chr08:25193184..25193208 (25 bp)
TATGGTGTCAATGTGGCATCATCAT
LOC_Os08g39980
Target Sequence 
CTCGACGCCACCAGGGAGGAGGATCGGTCGGCCACCGAAGCGGGCGGCCGCGCCGCCGACGCCGCCGCCGTCCAAGAGGG
CCAAGGACGACAAGCCGACCAGGAAGCGCGGGAAGAAGTGAACGGTCGTCGGAATGGGGAGGTGGCGGGAAAGGCTGCGG
GTGTAAATGTTTGTAGGGGTTGGCGGTAGAAAAAAACCTTTTGTTTTTGTGTTTTGGCGCCAATTGTTGTAGCGAGGAGG
TGGGAGAATTTTTGTTGCTTTTTGGCGGGAGATGAACGATGGAACATCTGGTTTCACTCTCACCTCGATACTTCATGAAA
GATTAAGAACTTTGGTGAAAGAATCGTGTTCACCTTAAGGCTGGTTTTGTAGGATATGTTTTTGACTGGATTCTGTAACC
TACACTGAATCAGGACACATTGGTGTCAATATGGCATGAATCGAATCAAGAACATATGGTGTCAATGTGGCATCATCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54007.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis