Browse Element(s) Details


OsAffx.17425.1.S1_at

Description tigr:9636.m04039
TID=OsAffx.17425.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3993011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g39890Os.6636.1.S1_at10/118+25141631..25145853SBP-domain protein 5, putative, expressed
LOC_Os08g39890OsAffx.2442.1.S1_x_at1/118+25141631..25145853SBP-domain protein 5, putative, expressed
LOC_Os08g39900OsAffx.6089.1.S1_at11/118+25148126..25148752hypothetical protein
LOC_Os08g39910Os.27691.1.S1_x_at3/118+25157104..25160098retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g39920Os.27691.2.S1_x_at2/118+25160347..25161312retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g39920Os.27691.1.S1_x_at2/118+25160347..25161312retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g39930OsAffx.17425.1.S1_at11/118+25169117..25169446expressed protein
LOC_Os08g39940OsAffx.17426.1.S1_at11/118+25176585..25178901Leucine Rich Repeat family protein
LOC_Os08g39950Os.24908.1.S1_at11/118+25180701..25185727potassium uptake protein, expressed
LOC_Os08g39960Os.52809.1.S1_at11/118+25186185..25187874NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os08g39970Os.19508.1.S1_at11/118+25188689..25192696ENT domain containing protein, expressed
LOC_Os08g39980Os.57192.1.S1_x_at11/118+25193178..25196517Bromodomain containing protein, expressed
LOC_Os08g39980Os.57192.1.S1_at11/118+25193178..25196517Bromodomain containing protein, expressed
LOC_Os08g39980Os.54007.1.S1_s_at11/118+25193178..25196517Bromodomain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17425.1.S1_at--499--1971Chr08:25169365..25169389 (25 bp)
ACTGCATTCGACGTTGCCTCTTTCA
LOC_Os08g39930
OsAffx.17425.1.S1_at--325--1671Chr08:25169334..25169358 (25 bp)
AGCCCGTCCTTCAAGCTGAAGCCTT
LOC_Os08g39930
OsAffx.17425.1.S1_at--540--8991Chr08:25169318..25169342 (25 bp)
TGAAGCCTTCTTTCCTCTCATCAGA
LOC_Os08g39930
OsAffx.17425.1.S1_at--396--10671Chr08:25169307..25169331 (25 bp)
TTCCTCTCATCAGACTAGTTCACAG
LOC_Os08g39930
OsAffx.17425.1.S1_at--541--10051Chr08:25169292..25169316 (25 bp)
TAGTTCACAGTCACTGGACCATTGG
LOC_Os08g39930
OsAffx.17425.1.S1_at--749--8091Chr08:25169277..25169301 (25 bp)
GGACCATTGGATTCGGCGGCCTTGA
LOC_Os08g39930
OsAffx.17425.1.S1_at--468--8351Chr08:25169263..25169287 (25 bp)
GGCGGCCTTGAAGCTGCTAGATTCA
LOC_Os08g39930
OsAffx.17425.1.S1_at--579--3711Chr08:25169247..25169271 (25 bp)
CTAGATTCAGCAGCCCTGAGCTCAA
LOC_Os08g39930
OsAffx.17425.1.S1_at--1020--3351Chr08:25169219..25169243 (25 bp)
CACCGCAACTGGCAGCTCAGATGGT
LOC_Os08g39930
OsAffx.17425.1.S1_at--505--5391Chr08:25169171..25169195 (25 bp)
GAAGCAGATCAACATAGCGAACATG
LOC_Os08g39930
OsAffx.17425.1.S1_at--1062--2491Chr08:25169152..25169176 (25 bp)
AACATGGATGCTAGAGGAGTGGCAA
LOC_Os08g39930
Target Sequence 
ACTGCATTCGACGTTGCCTCTTTCAACCATCAGCCCGTCCTTCAAGCTGAAGCCTTCTTTCCTCTCATCAGACTAGTTCA
CAGTCACTGGACCATTGGATTCGGCGGCCTTGAAGCTGCTAGATTCAGCAGCCCTGAGCTCAAGGCCACCGCAACTGGCA
GCTCAGATGGTGGGGGCACGAGCAGCCTGATGAAGAAGCAGATCAACATAGCGAACATGGATGCTAGAGGAGTGGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17425.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis