Browse Element(s) Details


OsAffx.6089.1.S1_at

Description tigr:9636.m04036
TID=OsAffx.6089.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3990011/11hypothetical protein
LOC_Os11g058201/11transposon protein, putative, Mutator sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g39870Os.7762.1.S1_at10/118+25127286..25134092Glycosyl hydrolase family 1 protein, expressed
LOC_Os08g39880Os.5805.1.S1_at11/118+25137215..25140785G-patch domain containing protein, expressed
LOC_Os08g39890Os.6636.1.S1_at10/118+25141631..25145853SBP-domain protein 5, putative, expressed
LOC_Os08g39890OsAffx.2442.1.S1_x_at1/118+25141631..25145853SBP-domain protein 5, putative, expressed
LOC_Os08g39900OsAffx.6089.1.S1_at11/118+25148126..25148752hypothetical protein
LOC_Os08g39910Os.27691.1.S1_x_at3/118+25157104..25160098retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g39920Os.27691.2.S1_x_at2/118+25160347..25161312retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g39920Os.27691.1.S1_x_at2/118+25160347..25161312retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g39930OsAffx.17425.1.S1_at11/118+25169117..25169446expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6089.1.S1_at--1040--5651Chr08:25148184..25148208 (25 bp)
GACAGGGCAGGCACAACTGCCTCAA
LOC_Os08g39900
OsAffx.6089.1.S1_at--697--9172Chr11:2693472..2693494 (23 bp)
TGCCTCAAGAACCTCCAGTTCGTGT
LOC_Os11g05820
OsAffx.6089.1.S1_at--800--3751Chr08:25148228..25148252 (25 bp)
CTCTTTGTCCTTGCACGAAGTGTGA
LOC_Os08g39900
OsAffx.6089.1.S1_at--409--6431Chr08:25148279..25148303 (25 bp)
GATCTTCGTTCGCTCTTGTGCGAGG
LOC_Os08g39900
OsAffx.6089.1.S1_at--148--9591Chr08:25148292..25148315 (24 bp)
TCTTGTGCGAGGGTTGTACCACTGC
LOC_Os08g39900
OsAffx.6089.1.S1_at--1124--7891Chr08:25148303..25148648 (25 bp)
GGTTGTACCACTGCGAAATCCCTTT
LOC_Os08g39900
OsAffx.6089.1.S1_at--520--2271Chr08:25148639..25148663 (25 bp)
AAATCCCTTTCCGACGATGGCATAA
LOC_Os08g39900
OsAffx.6089.1.S1_at--260--351Chr08:25148660..25148684 (25 bp)
ATAACATCAATTTTCTCCGGCGTGC
LOC_Os08g39900
OsAffx.6089.1.S1_at--700--171Chr08:25148669..25148693 (25 bp)
ATTTTCTCCGGCGTGCACGGCTTTG
LOC_Os08g39900
OsAffx.6089.1.S1_at--755--10231Chr08:25148690..25148714 (25 bp)
TTTGGCTTCTCTCCATGGTACACAT
LOC_Os08g39900
OsAffx.6089.1.S1_at--880--3771Chr08:25148698..25148722 (25 bp)
CTCTCCATGGTACACATTCACTATT
LOC_Os08g39900
Target Sequence 
GACAGGGCAGGCACAACTGCCTCAAGAACCTCCAGTTCGTGTCCCTCTTTGTCCTTGCACGAAGTGTGAGGGAGGTAGTG
GAGACCAAGGCCGGCGATCTTCGTTCGCTCTTGTGCGAGGGTTGTACCACTGCGAAATCCCTTTCCGACGATGGCATAAC
ATCAATTTTCTCCGGCGTGCACGGCTTTGGCTTCTCTCCATGGTACACATTCACTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6089.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis