Browse Element(s) Details


OsAffx.6092.1.S1_at

Description tigr:9636.m04067
TID=OsAffx.6092.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=serthr protein phosphatase catalytic subunit-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4020011/11serine/threonine protein phosphatase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g40160Os.11578.1.S1_at11/118+25283288..25285949thylakoid lumen protein, chloroplast precursor, putative, expressed
LOC_Os08g40170Os.5060.1.S1_at11/118+25287041..25288924Cell division control protein 2 homolog D, putative, expressed
LOC_Os08g40170OsAffx.27261.1.S1_at2/118+25287041..25288924Cell division control protein 2 homolog D, putative, expressed
LOC_Os08g40180Os.7600.1.S1_at11/118+25293848..252986563-hydroxy-3-methylglutaryl-coenzyme A reductase 3, putative, expressed
LOC_Os08g40180Os.48518.1.S1_at1/118+25293848..252986563-hydroxy-3-methylglutaryl-coenzyme A reductase 3, putative, expressed
LOC_Os08g40190NANA8+25301590..25303396expressed protein
LOC_Os08g40200OsAffx.6092.1.S1_at11/118+25304354..25308010serine/threonine protein phosphatase, putative, expressed
LOC_Os08g40210NANA8+25308379..25308708expressed protein
LOC_Os08g40220NANA8+25310492..25310781hypothetical protein
LOC_Os08g40230Os.13654.1.S1_at11/118+25311620..25317222expressed protein
LOC_Os08g40240NANA8+25318120..25318545CP12 domain containing protein, expressed
LOC_Os08g40250OsAffx.6093.1.S1_at11/118+25328770..25335292expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009785biological_processblue light signaling pathway
GO:0005634cellular_componentnucleus
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6092.1.S1_at--524--5131Chr08:25305554..25305578 (25 bp)
GCAAATTCCTCTGTTGATCCAACTT
LOC_Os08g40200
OsAffx.6092.1.S1_at--903--4371Chr08:25305572..25305596 (25 bp)
CCAACTTTGATGAAGCTCGGATCCT
LOC_Os08g40200
OsAffx.6092.1.S1_at--1031--1571Chr08:25305585..25305609 (25 bp)
AGCTCGGATCCTTGGATGAGTTATT
LOC_Os08g40200
OsAffx.6092.1.S1_at--606--2911Chr08:25305616..25305640 (25 bp)
AAGGAGAACTGTTCTCGACCCTCCA
LOC_Os08g40200
OsAffx.6092.1.S1_at--1042--7631Chr08:25305642..25305666 (25 bp)
GGGAGGGCTCAAATTTGATTCCTGG
LOC_Os08g40200
OsAffx.6092.1.S1_at--242--10251Chr08:25305675..25305699 (25 bp)
TTTGGTCTGATCCTTCTTTGGAGAT
LOC_Os08g40200
OsAffx.6092.1.S1_at--594--8051Chr08:25305694..25305718 (25 bp)
GGAGATGGGTCTTTCCTCAAATAAA
LOC_Os08g40200
OsAffx.6092.1.S1_at--726--2751Chr08:25305717..25305741 (25 bp)
AAGAAAGAGGCATTGGCTTGCTTTG
LOC_Os08g40200
OsAffx.6092.1.S1_at--238--7711Chr08:25305742..25305766 (25 bp)
GGGTCCAGATATCACTCAACAGTTT
LOC_Os08g40200
OsAffx.6092.1.S1_at--45--3571Chr08:25307061..25307085 (25 bp)
CATCAGGTCACATGAGGGTCCAGAT
LOC_Os08g40200
OsAffx.6092.1.S1_at--176--7951Chr08:25307125..25307149 (25 bp)
GGATATACAATTGACCATCATGTGG
LOC_Os08g40200
Target Sequence 
GCAAATTCCTCTGTTGATCCAACTTTGATGAAGCTCGGATCCTTGGATGAGTTATTGAAAGCAAGGAGAACTGTTCTCGA
CCCTCCATGGGAGGGCTCAAATTTGATTCCTGGTGATGTTCTTTGGTCTGATCCTTCTTTGGAGATGGGTCTTTCCTCAA
ATAAAGAAAGAGGCATTGGCTTGCTTTGGGGTCCAGATATCACTCAACAGTTTCTATATACAAATAATTTAAAGTTAATC
ATCAGGTCACATGAGGGTCCAGATGCAAGAGATAAACGACATGATCTTTTAGGAATGGACAATGGATATACAATTGACCA
TCATGTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6092.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis