Browse Element(s) Details


Os.13728.1.S1_at

Description gb:CA766612
DB_XREF= gi:27548559
DB_XREF=AF53-Rpf_12_C03_T7_010.ab1
CLONE=C0004275
TID=Os.13728.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.13728 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g151645/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g15120NANA10+7685199..7685594hypothetical protein
LOC_Os10g15130OsAffx.22385.1.S1_x_at11/1110+7686171..7689131retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g15140NANA10+7690248..7690679hypothetical protein
LOC_Os10g15150OsAffx.18256.1.S1_at11/1110+7699177..7699977hypothetical protein
LOC_Os10g15160OsAffx.18257.1.S1_x_at11/1110+7704396..7704704serine/threonine protein kinase, putative
LOC_Os10g15164Os.14497.1.S1_at11/1110+7709036..7713467expressed protein
LOC_Os10g15164Os.13728.1.S1_at5/1110+7709036..7713467expressed protein
LOC_Os10g15170NANA10+7714330..7717729retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g15180NANA10+7718976..7721846retrotransposon protein, putative, unclassified
LOC_Os10g15190NANA10+7722733..7723759hypothetical protein
LOC_Os10g15200NANA10+7727030..7727641retrotransposon, putative, centromere-specific
LOC_Os10g15210NANA10+7729358..7734672retrotransposon protein, putative, unclassified
LOC_Os10g15220OsAffx.30421.1.S1_s_at11/1110+7736492..7738270hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13728.1.S1_at--476--6651NONE
GTTGAGTTCGCCCTATTGTATTTAT
NONE
Os.13728.1.S1_at--968--4151NONE
CGCCCTATTGTATTTATGCTTTTAA
NONE
Os.13728.1.S1_at--1133--9972Chr10:7712247..7712271 (25 bp)
TATCCGCCAGTGAGGTGCCTGCCCT
LOC_Os10g15164
Os.13728.1.S1_at--508--9153Chr10:7712233..7712252 (20 bp)
TGCCCTGCCAACTACTTAGGAGTGT
LOC_Os10g15164
Os.13728.1.S1_at--50--1212Chr10:7711956..7711980 (25 bp)
AGTATTCTACATGGTTGTCTCCTCC
LOC_Os10g15164
Os.13728.1.S1_at--478--3371NONE
CACCTGCCTCTCACAAAAACTAGAT
NONE
Os.13728.1.S1_at--669--6511NONE
GATATTTTATCGACACCGGCAGTTG
NONE
Os.13728.1.S1_at--411--3951NONE
CGGCAGTTGCTCGATGTTCTTGAAG
NONE
Os.13728.1.S1_at--133--9251NONE
TCCTATTAACTTATCTGTGCTGTCA
NONE
Os.13728.1.S1_at--399--3292Chr10:7711725..7711749 (25 bp)
CAAATAAGCTTTAGTGATCGTCAAC
LOC_Os10g15164
Os.13728.1.S1_at--105--5952Chr10:7711673..7711697 (25 bp)
GAGCACACCAGCTAGAGCTGATCAT
LOC_Os10g15164
Target Sequence 
GTTGAGTTCGCCCTATTGTATTTATGCTTTTAATCACTCCATCTTCTGCCNAATTGACGCGGTTCTATCCGCCAGTGAGG
TGCCTGCCCTGCCAACTACTTAGGAGTGTGCNAGTATTCTACATGGTTGTCTCCTCCATGATCACTTAGCANNNNNNGGT
CAATTTCAACACCTGCCTCTCACAAAAACTAGATATATGATATTTTATCGACACCGGCAGTTGCTCGATGTTCTTGAAGA
ATAGCATGTCAAACTGAANAATCTTAGCCAAGATCATGCAGCGATAGATTTATTAAGTTTGATGGTTACGATTTNCAGTT
TCCTNTTCCTATTAACTTATCTGTGCTGTCAAATAAGCTTTAGTGATCGTCAACNAAAGCANTGTGTACCTCTGAAGCAA
NGAGCACACCAGCTAGAGCTGATCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13728.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis