Browse Element(s) Details


Os.13835.2.S3_a_at

Description gb:AK105151.1
DB_XREF= gi:32990360
TID=Os.13835.2
CNT=11
FEA=FLmRNA
TIER=ConsEnd
STK=0
UG=Os.13835 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative choline kinase (P0683B11.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-103-E05, full insert sequence.
FL= gb:AK105151.1 gb:AK070065.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5192011/11Choline/ethanolamine kinase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g51860Os.15991.1.S1_at11/111+30143670..30146584violaxanthin de-epoxidase, putative, expressed
LOC_Os01g51860OsAffx.13678.2.S1_at1/111+30143670..30146584violaxanthin de-epoxidase, putative, expressed
LOC_Os01g51870OsAffx.23754.1.S1_x_at11/111+30147576..30148730embryo-abundant protein, putative, expressed
LOC_Os01g51870Os.33184.1.S1_at11/111+30147576..30148730embryo-abundant protein, putative, expressed
LOC_Os01g51880OsAffx.11567.1.S1_s_at11/111+30149180..30150624hypothetical protein
LOC_Os01g51890Os.11023.1.S2_a_at11/111+30157112..30163085inositol polyphosphate 5-phosphatase, putative, expressed
LOC_Os01g51890Os.11023.1.S1_a_at11/111+30157112..30163085inositol polyphosphate 5-phosphatase, putative, expressed
LOC_Os01g51904Os.50521.1.S1_at2/111+30166253..30168706hypothetical protein
LOC_Os01g51920Os.13835.2.S2_at11/111+30169688..30173672Choline/ethanolamine kinase family protein, expressed
LOC_Os01g51920Os.13835.2.S3_a_at11/111+30169688..30173672Choline/ethanolamine kinase family protein, expressed
LOC_Os01g51920Os.13835.2.S1_a_at11/111+30169688..30173672Choline/ethanolamine kinase family protein, expressed
LOC_Os01g51930OsAffx.23756.1.S1_at10/111+30179099..30179906hypothetical protein
LOC_Os01g51930OsAffx.21539.1.S1_x_at2/111+30179099..30179906hypothetical protein
LOC_Os01g51940OsAffx.11568.2.S1_at11/111+30181508..30182541hypothetical protein
LOC_Os01g51950Os.46012.2.S1_x_at7/111+30187693..30193271retrotransposon protein, putative, unclassified
LOC_Os01g51950Os.46012.3.S1_x_at5/111+30187693..30193271retrotransposon protein, putative, unclassified
LOC_Os01g51950Os.27088.1.A1_x_at4/111+30187693..30193271retrotransposon protein, putative, unclassified
LOC_Os01g51960OsAffx.11569.1.S1_at11/111+30195755..30196102hypothetical protein
LOC_Os01g51970OsAffx.23757.1.S1_at8/111+30198011..30200500hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009611biological_processresponse to wounding
GO:0004103molecular_functioncholine kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13835.2.S3_a_at--1063--1731Chr01:30171760..30171784 (25 bp)
ACCTTCGTGATCCTGAAATTTCAGC
LOC_Os01g51920
Os.13835.2.S3_a_at--60--191Chr01:30171743..30171767 (25 bp)
ATTTCAGCTCTGGTGGCGTCAAAAC
LOC_Os01g51920
Os.13835.2.S3_a_at--682--8351Chr01:30171729..30171753 (25 bp)
GGCGTCAAAACTGAGGGAATTCCAC
LOC_Os01g51920
Os.13835.2.S3_a_at--308--3631Chr01:30171701..30171725 (25 bp)
CTTGACATGCCTGGCCCGAAATCTG
LOC_Os01g51920
Os.13835.2.S3_a_at--1024--8471Chr01:30171569..30171593 (25 bp)
TGGCTCAAAACTGCAAGGAACCTGT
LOC_Os01g51920
Os.13835.2.S3_a_at--1001--2911Chr01:30171555..30171579 (25 bp)
AAGGAACCTGTGCTCATCTGATGAA
LOC_Os01g51920
Os.13835.2.S3_a_at--908--3851Chr01:30171538..30171562 (25 bp)
CTGATGAATCCAAGAAATTTCGGCT
LOC_Os01g51920
Os.13835.2.S3_a_at--498--191Chr01:30171522..30171546 (25 bp)
ATTTCGGCTGGGTAGCCTGGAGAAC
LOC_Os01g51920
Os.13835.2.S3_a_at--49--9951Chr01:30171461..30171485 (25 bp)
TACCACGGGATTGGTTTTTGCCACA
LOC_Os01g51920
Os.13835.2.S3_a_at--389--3971Chr01:30171456..30171480 (25 bp)
CGGGATTGGTTTTTGCCACAACGAT
LOC_Os01g51920
Os.13835.2.S3_a_at--1003--6591Chr01:30171411..30171435 (25 bp)
GATTGATGAAGACACCAACATGTTG
LOC_Os01g51920
Target Sequence 
ACCTTCGTGATCCTGAAATTTCAGCTCTGGTGGCGTCAAAACTGAGGGAATTCCACAACCTTGACATGCCTGGCCCGAAA
TCTGTACTCATTTGGGACCGACTGAAGTAAGAGCATTTTCTCAGATAAATATACACTTGGCACTTTTAATAAGTATATAA
AACTAAACCTGGCCGTGCTTTTTCTAGAAACTGGCTCAAAACTGCAAGGAACCTGTGCTCATCTGATGAATCCAAGAAAT
TTCGGCTGGGTAGCCTGGAGAACGAGATTGCTGCATTGGAGAAAGAATTTTCAGGGGATTACCACGGGATTGGTTTTTGC
CACAACGATCTTCAGTATGGCAACATCATGATTGATGAAGACACCAACATGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13835.2.S3_a_at     

Putative homologies in rice

Putative homologies in arabidopsis