Browse Element(s) Details


Os.14174.1.S1_at

Description gb:AK059296.1
DB_XREF= gi:32969314
TID=Os.14174.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14174 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033031K02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-025-E10, full insert sequence.
FL= gb:AK101236.1 gb:AK059296.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4273011/11Biotin synthase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g42710OsAffx.29635.1.S1_at11/118+26884119..26894386NB-ARC domain containing protein
LOC_Os08g42720Os.5639.1.S1_at11/118+26894750..26899312anthocyanin-related membrane protein 1, putative, expressed
LOC_Os08g42730Os.14174.1.S1_at11/118+26902095..26905995Biotin synthase, putative, expressed
LOC_Os08g42740Os.14654.1.S1_at11/118+26914526..26922173ARI, RING finger protein, putative, expressed
LOC_Os08g42750Os.12642.1.S1_at11/118+26922219..26926514Calcium-dependent protein kinase, isoform AK1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009102biological_processbiotin biosynthesis
GO:0004076molecular_functionbiotin synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14174.1.S1_at--740--4991Chr08:26905462..26905486 (25 bp)
GCATGATTGCCACAGCTCGAATTGT
LOC_Os08g42730
Os.14174.1.S1_at--904--8291Chr08:26905507..26905531 (25 bp)
GGCTTTCAGCAGGACGAGTACGTTT
LOC_Os08g42730
Os.14174.1.S1_at--1114--1171Chr08:26905523..26905547 (25 bp)
AGTACGTTTCTCCATGCCAGAGCAA
LOC_Os08g42730
Os.14174.1.S1_at--811--1851Chr08:26905615..26905639 (25 bp)
ACGACTTTGATGCAGACCAGGCGAT
LOC_Os08g42730
Os.14174.1.S1_at--312--9731Chr08:26905642..26905666 (25 bp)
TCAAGATCCTTGGTCTGATTCCCAA
LOC_Os08g42730
Os.14174.1.S1_at--1152--6571Chr08:26905658..26905682 (25 bp)
GATTCCCAAGGCTCCAAGCTTTGGT
LOC_Os08g42730
Os.14174.1.S1_at--320--5391Chr08:26905686..26905710 (25 bp)
GAAGCACCAGCTGCAGACACTGAGA
LOC_Os08g42730
Os.14174.1.S1_at--1000--5071Chr08:26905780..26905804 (25 bp)
GCACCATTATTTCCGGTTAGCGCAT
LOC_Os08g42730
Os.14174.1.S1_at--511--431Chr08:26905878..26905902 (25 bp)
ATCATTGTTCTTGTTGTGCCATTTT
LOC_Os08g42730
Os.14174.1.S1_at--82--9671Chr08:26905915..26905939 (25 bp)
TCAGCTTCAATCTCAGTTTTCCTTT
LOC_Os08g42730
Os.14174.1.S1_at--987--10291Chr08:26905939..26905963 (25 bp)
TTTCCTCTTTGATGCTACACTGAAG
LOC_Os08g42730
Target Sequence 
GCATGATTGCCACAGCTCGAATTGTGATGCCGAAGGCAATGGTGAGGCTTTCAGCAGGACGAGTACGTTTCTCCATGCCA
GAGCAAGCGCTCTGCTTCCTAGCTGGGGCCAACTCCATCTTCGCTGGTGAGAAACTTCTAACAACCNCAAACAACGACTT
TGATGCAGACCAGGCGATGTTCAAGATCCTTGGTCTGATTCCCAAGGCTCCAAGCTTTGGTGATGAAGCACCAGCTGCAG
ACACTGAGAGATGTGAGGAAGCTGCATCAATGTAGAACACCAATAGAAACTCTTGAGAACACGTTCGGTGCAAAAGTAGC
ACCATTATTTCCGGTTAGCGCATTGTATTGTAGAGATTACAATATCTTGTAGTAAGTTAGAAAAAGATCGACCCAAATAA
ATAGGGAATTTTCTGTATCATTGTTCTTGTTGTGCCATTTTGTGACATTTCAATCAGCTTCAATCTCAGTTTTCCTTTTT
CCTCTTTGATGCTACACTGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14174.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis