Browse Element(s) Details


Os.12642.1.S1_at

Description gb:AK103306.1
DB_XREF= gi:32988515
TID=Os.12642.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.12642 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033125E13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033125E13, full insert sequence.
FL= gb:AK103306.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4275011/11Calcium-dependent protein kinase, isoform AK1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g42720Os.5639.1.S1_at11/118+26894750..26899312anthocyanin-related membrane protein 1, putative, expressed
LOC_Os08g42730Os.14174.1.S1_at11/118+26902095..26905995Biotin synthase, putative, expressed
LOC_Os08g42740Os.14654.1.S1_at11/118+26914526..26922173ARI, RING finger protein, putative, expressed
LOC_Os08g42750Os.12642.1.S1_at11/118+26922219..26926514Calcium-dependent protein kinase, isoform AK1, putative, expressed
LOC_Os08g42760Os.54706.1.S1_at11/118+26931981..26935339Bicoid-interacting protein 3 containing protein, expressed
LOC_Os08g42770OsAffx.29636.1.S1_at11/118+26935872..26936669hypothetical protein
LOC_Os08g42780OsAffx.8265.1.S1_x_at3/118+26937096..26937437hypothetical protein
LOC_Os08g42790NANA8+26938025..26938534hypothetical protein
LOC_Os08g42800Os.57182.1.S1_at10/118+26939320..26939809expressed protein
LOC_Os08g42810OsAffx.17482.1.S1_at11/118+26942273..26942485hypothetical protein
LOC_Os08g42820OsAffx.6115.1.S1_at10/118+26944047..26945388hypothetical protein
LOC_Os08g42830Os.14919.1.S1_at4/118+26947842..26951738Transposable element protein, putative, MuDR

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0009738biological_processabscisic acid mediated signaling
GO:0004672molecular_functionprotein kinase activity
GO:0004685molecular_functioncalcium- and calmodulin-dependent protein kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12642.1.S1_at--378--8911Chr08:26922713..26922737 (25 bp)
TGAGCAACGACGAGTACCTGGCGGC
LOC_Os08g42750
Os.12642.1.S1_at--560--1051Chr08:26922626..26922650 (25 bp)
AGGTGGGCCCAAACGAGCAGGCCAT
LOC_Os08g42750
Os.12642.1.S1_at--446--4511Chr08:26922563..26922587 (25 bp)
GCCGCATCAGCTACCAGGAGTTCGA
LOC_Os08g42750
Os.12642.1.S1_at--955--1571Chr08:26922539..26922563 (25 bp)
AGCTCATGATGAAGTCCGGCGCCGA
LOC_Os08g42750
Os.12642.1.S1_at--47--911Chr08:26922459..26922483 (25 bp)
AGGCTCTGCAAGGATACTCTTACTC
LOC_Os08g42750
Os.12642.1.S1_at--538--2011Chr08:26922444..26922468 (25 bp)
ACTCTTACTCCCTGATGATCGATGA
LOC_Os08g42750
Os.12642.1.S1_at--378--611Chr08:26922420..26922444 (25 bp)
ATGCCCAACAATCTCATCAACTTTG
LOC_Os08g42750
Os.12642.1.S1_at--856--10171Chr08:26922382..26922406 (25 bp)
TATAAACTGCACATCTTTCACCTTC
LOC_Os08g42750
Os.12642.1.S1_at--890--3671Chr08:26922368..26922392 (25 bp)
CTTTCACCTTCACCAGACAGGGATA
LOC_Os08g42750
Os.12642.1.S1_at--917--7651Chr08:26922243..26922267 (25 bp)
GGGATCGTACCGGTTTTGCTACTCT
LOC_Os08g42750
Os.12642.1.S1_at--1037--6791Chr08:26922231..26922255 (25 bp)
GTTTTGCTACTCTTTCGGTAAATGG
LOC_Os08g42750
Target Sequence 
TGAGCAACGACGAGTACCTGGCGGCGGCGTTCAACTACTTCGACAAGGACGGCAGCGGGTTCATCGANCTGGACGANCTN
CGGNAGGAGGTGGGCCCAAACGAGCAGGCCATCCTGGAGATCCTCCGCGACGTCGACACCGANAAGGACGGCCGCATCAG
CTACCAGGAGTTCGAGCTCATGATGAAGTCCGGCGCCGACTGGAGGAACGCCTCCAGGCACTTCTCCAGGGCCAACTTCA
GCACCCTCAGCAGGAGGCTCTGCAAGGATACTCTTACTCCCTGATGATCGATGATGCCCAACAATCTCATCAACTTTGTT
TCATCAAGGCTTATAAACTGCACATCTTTCACCTTCACCAGACAGGGATAACTAGAGAGAGATACAAGACCAACTTAGAG
AAATGTATTGGAGTGGCAACACGATGCGATNCTGCGCTTGGATTGTGAAATGAGAAATGGAACTGAAATGGGGATCGTAC
CGGTTTTGCTACTCTTTCGGTAAATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12642.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis