Browse Element(s) Details


OsAffx.8265.1.S1_x_at

Description gb:NM_195842.1
DB_XREF= gi:37533043
TID=OsAffx.8265.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0015I18.3), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g427803/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g42740Os.14654.1.S1_at11/118+26914526..26922173ARI, RING finger protein, putative, expressed
LOC_Os08g42750Os.12642.1.S1_at11/118+26922219..26926514Calcium-dependent protein kinase, isoform AK1, putative, expressed
LOC_Os08g42760Os.54706.1.S1_at11/118+26931981..26935339Bicoid-interacting protein 3 containing protein, expressed
LOC_Os08g42770OsAffx.29636.1.S1_at11/118+26935872..26936669hypothetical protein
LOC_Os08g42780OsAffx.8265.1.S1_x_at3/118+26937096..26937437hypothetical protein
LOC_Os08g42790NANA8+26938025..26938534hypothetical protein
LOC_Os08g42800Os.57182.1.S1_at10/118+26939320..26939809expressed protein
LOC_Os08g42810OsAffx.17482.1.S1_at11/118+26942273..26942485hypothetical protein
LOC_Os08g42820OsAffx.6115.1.S1_at10/118+26944047..26945388hypothetical protein
LOC_Os08g42830Os.14919.1.S1_at4/118+26947842..26951738Transposable element protein, putative, MuDR
LOC_Os08g42840OsAffx.29638.1.S1_at11/118+26953583..26956405Leucine Rich Repeat family protein
LOC_Os08g42850Os.8230.1.S1_at11/118+26958008..26960497FKBP-type peptidyl-prolyl cis-trans isomerase 2, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8265.1.S1_x_at--714--8512Chr08:26937145..26937169 (25 bp)
TGGACTACTTCCTGGCGGTGCTCAT
LOC_Os08g42780
OsAffx.8265.1.S1_x_at--57--8491Chr10:9499925..9499949 (25 bp)
TGGCGGTGCTCATCGTCGTCGCCAT
NONE
OsAffx.8265.1.S1_x_at--39--7212Chr08:26937171..26937207 (25 bp)
GTCGTCGCGGCGAGGCTGCTCATCT
LOC_Os08g42780
OsAffx.8265.1.S1_x_at--247--5852Chr08:26937281..26937305 (25 bp)
GACCACCGACGACGACATCGAGATG
LOC_Os08g42780
OsAffx.8265.1.S1_x_at--258--4651Chr10:9499768..9499792 (25 bp)
GCGGCCAGGACCACGAATCGAAGAA
NONE
OsAffx.8265.1.S1_x_at--153--2273Chr12:23439487..23439566 (25 bp)
AAATCAAGAAGCAGCGCGAGCGCCG
NONE
OsAffx.8265.1.S1_x_at--645--5251Chr10:9499614..9499638 (25 bp)
GAATCCGCCGCAAGAACCCTAGCAG
NONE
OsAffx.8265.1.S1_x_at--21--10011Chr10:9499595..9499619 (25 bp)
TAGCAGGAACAAAGGAAGACGACGG
NONE
OsAffx.8265.1.S1_x_at--1089--2753Chr11:13136942..13136966 (25 bp)
AAGACGACGGTGATGCGTTACCGGC
NONE
OsAffx.8265.1.S1_x_at--195--8051Chr10:9499544..9499568 (25 bp)
GGAGAGCGCGTACGTCGGATGGGAA
NONE
OsAffx.8265.1.S1_x_at--99--3971Chr10:9499529..9499553 (25 bp)
CGGATGGGAAGCAGTCGCCGTCGAC
NONE
Target Sequence 
TGGACTACTTCCTGGCGGTGCTCATCGTCGTCGCCATCGTCGTCGCGGCGAGGCTGCTCATCTGCGCTGTGGCCCGCTGC
CTCGTCCACAACGTCGCCGGAGCGGCGCACCACCACCATAGCCCGACCCCCGACGACCACCGACGACGACATCGAGATGC
GGGGCGCCGGCGGCCAGGACCACGAATCGAAGAAAATCAAGAAGCAGCGCGAGCGCCGCCTCGAGCGCGGCGGCGAGCGG
CGGTAGCGCCCGCTCCTCCTCCTCCTCCTCCTCCCCCTCCCCCCTCCGCTCCCGGAGCTCCTCCACGAAGGGCCCCAGCA
GCCGAATCCGCCGCAAGAACCCTAGCAGGAACAAAGGAAGACGACGGTGATGCGTTACCGGCGAGAAGGCAGCGGAGAGC
GCGTACGTCGGATGGGAAGCAGTCGCCGTCGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8265.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis