Browse Element(s) Details


Os.54706.1.S1_at

Description gb:AK106511.1
DB_XREF= gi:32991720
TID=Os.54706.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54706 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-105-H09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-105-H09, full insert sequence.
FL= gb:AK106511.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4276011/11Bicoid-interacting protein 3 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g42740Os.14654.1.S1_at11/118+26914526..26922173ARI, RING finger protein, putative, expressed
LOC_Os08g42750Os.12642.1.S1_at11/118+26922219..26926514Calcium-dependent protein kinase, isoform AK1, putative, expressed
LOC_Os08g42760Os.54706.1.S1_at11/118+26931981..26935339Bicoid-interacting protein 3 containing protein, expressed
LOC_Os08g42770OsAffx.29636.1.S1_at11/118+26935872..26936669hypothetical protein
LOC_Os08g42780OsAffx.8265.1.S1_x_at3/118+26937096..26937437hypothetical protein
LOC_Os08g42790NANA8+26938025..26938534hypothetical protein
LOC_Os08g42800Os.57182.1.S1_at10/118+26939320..26939809expressed protein
LOC_Os08g42810OsAffx.17482.1.S1_at11/118+26942273..26942485hypothetical protein
LOC_Os08g42820OsAffx.6115.1.S1_at10/118+26944047..26945388hypothetical protein
LOC_Os08g42830Os.14919.1.S1_at4/118+26947842..26951738Transposable element protein, putative, MuDR
LOC_Os08g42840OsAffx.29638.1.S1_at11/118+26953583..26956405Leucine Rich Repeat family protein
LOC_Os08g42850Os.8230.1.S1_at11/118+26958008..26960497FKBP-type peptidyl-prolyl cis-trans isomerase 2, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54706.1.S1_at--1119--1671Chr08:26934301..26934325 (25 bp)
AGCCTCAACCTTGGACCTCATATAG
LOC_Os08g42760
Os.54706.1.S1_at--547--2031Chr08:26934747..26934771 (25 bp)
ACTTCAATACCATCCTAATACATCC
LOC_Os08g42760
Os.54706.1.S1_at--796--3131Chr08:26934777..26934801 (25 bp)
AATTCCGGGAGATACTTCTAGACAA
LOC_Os08g42760
Os.54706.1.S1_at--971--6111Chr08:26934930..26934954 (25 bp)
GAGGGCGCTGTTACTGGTTTTGACC
LOC_Os08g42760
Os.54706.1.S1_at--1101--10431Chr08:26934949..26934973 (25 bp)
TTGACCGCCCAATCGAAGTTTACCA
LOC_Os08g42760
Os.54706.1.S1_at--514--3611Chr08:26935000..26935024 (25 bp)
CTTGACATTTCCTGCCAAAGGCATA
LOC_Os08g42760
Os.54706.1.S1_at--833--7771Chr08:26935028..26935052 (25 bp)
GGTGCTTCAGATGTGCAGCTTGTTT
LOC_Os08g42760
Os.54706.1.S1_at--454--691Chr08:26935074..26935098 (25 bp)
ATGACGCTTTCTTCCATTCGACAAA
LOC_Os08g42760
Os.54706.1.S1_at--466--2091Chr08:26935118..26935142 (25 bp)
ACATACCGCTGGATTTGCATTTGCA
LOC_Os08g42760
Os.54706.1.S1_at--698--5331Chr08:26935143..26935167 (25 bp)
GAAGACTATTTGAACGCCCAAGGAA
LOC_Os08g42760
Os.54706.1.S1_at--155--5471Chr08:26935184..26935208 (25 bp)
GAACTGTTGGTACGTCCTCTTTGGA
LOC_Os08g42760
Target Sequence 
AGCCTCAACCTTGGACCTCATATAGGAGAAACAGATTGGTTTCAGAGGTTGCCAAAGAGAACTTCAATACCATCCTAATA
CATCCAGATAAATTCCGGGAGATACTTCTAGACAAGATCGGATTCAGGTCGGTAGAGGTGGTTACGGACAAACTGGAGGG
CGCTGTTACTGGTTTTGACCGCCCAATCGAAGTTTACCACAAAGTGATGGGAACTGGATCAAGTTCTTGACATTTCCTGC
CAAAGGCATATGTGGTGCTTCAGATGTGCAGCTTGTTTTAGTGGGATTCATTGAGCTCCATGACGCTTTCTTCCATTCGA
CAAACTTCAACGATGGCGCCCTCACATACCGCTGGATTTGCATTTGCAGAAGACTATTTGAACGCCCAAGGAATGAGATG
GGTAGATTGGAACTGTTGGTACGTCCTCTTTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54706.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis