Browse Element(s) Details


Os.8230.1.S1_at

Description gb:AK068255.1
DB_XREF= gi:32978273
TID=Os.8230.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.8230 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-003-F09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013149F15, full insert sequence.
FL= gb:AK104009.1 gb:AK068255.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4285011/11FKBP-type peptidyl-prolyl cis-trans isomerase 2, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g42760Os.54706.1.S1_at11/118+26931981..26935339Bicoid-interacting protein 3 containing protein, expressed
LOC_Os08g42770OsAffx.29636.1.S1_at11/118+26935872..26936669hypothetical protein
LOC_Os08g42780OsAffx.8265.1.S1_x_at3/118+26937096..26937437hypothetical protein
LOC_Os08g42790NANA8+26938025..26938534hypothetical protein
LOC_Os08g42800Os.57182.1.S1_at10/118+26939320..26939809expressed protein
LOC_Os08g42810OsAffx.17482.1.S1_at11/118+26942273..26942485hypothetical protein
LOC_Os08g42820OsAffx.6115.1.S1_at10/118+26944047..26945388hypothetical protein
LOC_Os08g42830Os.14919.1.S1_at4/118+26947842..26951738Transposable element protein, putative, MuDR
LOC_Os08g42840OsAffx.29638.1.S1_at11/118+26953583..26956405Leucine Rich Repeat family protein
LOC_Os08g42850Os.8230.1.S1_at11/118+26958008..26960497FKBP-type peptidyl-prolyl cis-trans isomerase 2, chloroplast precursor, putative, expressed
LOC_Os08g42860OsAffx.20354.1.S1_at2/118+26965938..26968659retrotransposon protein, putative, unclassified
LOC_Os08g42870Os.50389.1.S1_at11/118+26970473..26976632expressed protein
LOC_Os08g42880NANA8+26982758..26983288hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009543cellular_componentthylakoid lumen (sensu Viridiplantae)
GO:0003755molecular_functionpeptidyl-prolyl cis-trans isomerase activity
GO:0005528molecular_functionFK506 binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8230.1.S1_at--115--7771Chr08:26958783..26958807 (25 bp)
GGTGAAGGCCCAAGTCCACCCATTG
LOC_Os08g42850
Os.8230.1.S1_at--717--2851Chr08:26958794..26958817 (24 bp)
AAGTCCACCCATTGGCTTCCAGGTT
LOC_Os08g42850
Os.8230.1.S1_at--777--8291Chr08:26958807..26958916 (25 bp)
GGCTTCCAGGTTGCTGCAAATTATG
LOC_Os08g42850
Os.8230.1.S1_at--560--3131Chr08:26958910..26958934 (25 bp)
AATTATGTTGCCATGGTACCGAATG
LOC_Os08g42850
Os.8230.1.S1_at--5--7851Chr08:26958924..26958948 (25 bp)
GGTACCGAATGGACAGATATTTGAC
LOC_Os08g42850
Os.8230.1.S1_at--991--6511Chr08:26958939..26959087 (25 bp)
GATATTTGACAGTTCTCTGGAAAAG
LOC_Os08g42850
Os.8230.1.S1_at--661--7591Chr08:26959088..26959112 (25 bp)
GGGCAGCCCTACATATTCCGTGTTG
LOC_Os08g42850
Os.8230.1.S1_at--213--4551Chr08:26959093..26959117 (25 bp)
GCCCTACATATTCCGTGTTGGTTCA
LOC_Os08g42850
Os.8230.1.S1_at--932--10651Chr08:26959103..26959125 (23 bp)
TTCCGTGTTGGTTCAGGACAGGTGA
LOC_Os08g42850
Os.8230.1.S1_at--898--4031Chr08:26959924..26959944 (21 bp)
CGATTATACATACCTGGCCCGCTAG
LOC_Os08g42850
Os.8230.1.S1_at--288--9971Chr08:26959934..26960136 (25 bp)
TACCTGGCCCGCTAGCATTTCCGAA
LOC_Os08g42850
Target Sequence 
GGTGAAGGCCCAAGTCCACCCATTGGCTTCCAGGTTGCTGCAAATTATGTTGCCATGGTACCGAATGGACAGATATTTGA
CAGTTCTCTGGAAAAGGGGCAGCCCTACATATTCCGTGTTGGTTCAGGACAGGTGATAAAGGGACTTGATGAAGGGATAT
TGTCAATGAAGGTTGGAGGACTACGGNCGATTATACATACCTGGCCCGCTAGCATTTCCGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8230.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis