Browse Element(s) Details


Os.14176.1.S1_at

Description gb:AY262026.1
DB_XREF= gi:32699975
TID=Os.14176.1
CNT=21
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.14176 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) peroxisomal membrane protein OsPex14p mRNA, complete cds.
PROD=peroxisomal membrane protein OsPex14p
FL= gb:AY262026.1 gb:AK099093.1 gb:AK062021.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0109011/11Peroxisomal membrane anchor protein conserved region containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g01040Os.28975.1.S1_at11/115+43240..47780transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g01040Os.51196.1.S1_x_at10/115+43240..47780transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g01050Os.2473.1.S1_at11/115+48925..51138DNA-binding protein, putative, expressed
LOC_Os05g01060OsAffx.4218.1.S1_at10/115+53319..61323expressed protein
LOC_Os05g01070OsAffx.14486.1.S1_at10/115+63585..63862hypothetical protein
LOC_Os05g01080OsAffx.14487.1.S1_at11/115+65473..65973hypothetical protein
LOC_Os05g01090Os.14176.1.S1_at11/115+69722..73833Peroxisomal membrane anchor protein conserved region containing protein, expressed
LOC_Os05g01100OsAffx.4219.1.S1_at11/115+74141..74878expressed protein
LOC_Os05g01110Os.2476.1.S1_at11/115+75419..7784450S ribosomal protein L28, chloroplast precursor, putative, expressed
LOC_Os05g01110OsAffx.4220.1.S1_at11/115+75419..7784450S ribosomal protein L28, chloroplast precursor, putative, expressed
LOC_Os05g01120Os.53958.1.S1_at11/115+79445..82191Cytochrome P450 family protein, expressed
LOC_Os05g01130OsAffx.19542.3.S1_x_at7/115+83315..87536retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g01140Os.14938.1.S1_at11/115+94475..96310SAM dependent carboxyl methyltransferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006625biological_processprotein targeting to peroxisome
GO:0007031biological_processperoxisome organization and biogenesis
GO:0005777cellular_componentperoxisome
GO:0005829cellular_componentcytosol
GO:0005515molecular_functionprotein binding
GO:0008565molecular_functionprotein transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14176.1.S1_at--922--8091Chr05:73184..73208 (25 bp)
GGACCTTCGTATTCGTATCACCAGA
LOC_Os05g01090
Os.14176.1.S1_at--1126--9271Chr05:73231..73255 (25 bp)
TCCGGCTCCGGATATTCAAGCAGAG
LOC_Os05g01090
Os.14176.1.S1_at--198--6231Chr05:73256..73280 (25 bp)
GAGGCCAGGCCATCGGTATACATAA
LOC_Os05g01090
Os.14176.1.S1_at--954--6351Chr05:73354..73378 (25 bp)
GATGCCGGAAGCTGTGGCTGCCATC
LOC_Os05g01090
Os.14176.1.S1_at--260--2631Chr05:73404..73428 (25 bp)
AACCGTCGAGCGAAGCTTCTCAAGA
LOC_Os05g01090
Os.14176.1.S1_at--356--591Chr05:73446..73470 (25 bp)
ATGCCAACGGTGCTTCAAGTTCGTC
LOC_Os05g01090
Os.14176.1.S1_at--895--2811Chr05:73462..73486 (25 bp)
AAGTTCGTCGCCTCTTCCTGAAGAG
LOC_Os05g01090
Os.14176.1.S1_at--1093--1311Chr05:73483..73507 (25 bp)
AGAGGCGCTTGTTAATGGCAGTGAC
LOC_Os05g01090
Os.14176.1.S1_at--801--9911Chr05:73618..73642 (25 bp)
TACGGGAACGCCTACTGTGGTAACA
LOC_Os05g01090
Os.14176.1.S1_at--217--7811Chr05:73659..73683 (25 bp)
GGTCGAGTTTATACTACACTACGTC
LOC_Os05g01090
Os.14176.1.S1_at--731--6671Chr05:73695..73719 (25 bp)
GTTGCTACTAGCTGTGACTGTGAGT
LOC_Os05g01090
Target Sequence 
GGACCTTCGTATTCGTATCACCAGAATCAGAATCAGAACGGGAAGGCTCCGGCTCCGGATATTCAAGCAGAGGAGGCCAG
GCCATCGGTATACATAAGTGGGGCTGAGGAAAGGTCGCCTCCGCCTCCGCCTCAGCGCCGCTGGGTTCCCCCGCAGCCTC
CGGGCGTTGTGATGCCGGAAGCTGTGGCTGCCATCCGTCAACCAAAGTCCCTCGCAAAGCAACCGTCGAGCGAAGCTTCT
CAAGAGGCAGCCGGCGAGACGCATGCCAACGGTGCTTCAAGTTCGTCGCCTCTTCCTGAAGAGGCGCTTGTTAATGGCAG
TGACGCCGGACGTAGTGAGATCGAAGAACAAGCAGAAGCCATCTAGAAACAATTTGTTTTAAATTGGGACGAGATGATGT
TGAGAAGCTGGAATATGTATTTATTTTGGATCAGTACGGGAACGCCTACTGTGGTAACAGAAGATCTCGATTTGTGGTCG
AGTTTATACTACACTACGTCAAATAACAAGTGTTGCTACTAGCTGTGACTGTGAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14176.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis