Browse Element(s) Details


Os.14256.1.S1_a_at

Description gb:AK104786.1
DB_XREF= gi:32989995
TID=Os.14256.1
CNT=55
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.14256 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-310-H08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-039-D11, full insert sequence.
FL= gb:AK109439.2 gb:AK104786.1 gb:AK067792.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3693011/11aquaporin PIP2.8, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g36910OsAffx.18017.1.S1_at11/119+21291520..21293660bZIP transcription factor family protein, expressed
LOC_Os09g36920OsAffx.18018.1.S1_s_at11/119+21299441..21303732La domain containing protein, expressed
LOC_Os09g36930Os.14256.1.S1_a_at11/119+21309651..21311060aquaporin PIP2.8, putative, expressed
LOC_Os09g36940OsAffx.18019.1.S1_at11/119+21312642..21313340Plastocyanin-like domain containing protein, expressed
LOC_Os09g36950OsAffx.18020.1.S1_at11/119+21315300..21315704hypothetical protein
LOC_Os09g36960NANA9+21320178..21320582hypothetical protein
LOC_Os09g36970OsAffx.6499.1.S1_at11/119+21327366..21327821hypothetical protein
LOC_Os09g36970OsAffx.6499.1.S1_x_at11/119+21327366..21327821hypothetical protein
LOC_Os09g36976Os.24767.1.S1_at11/119+21330266..21332247expressed protein
LOC_Os09g36976OsAffx.30161.1.S1_s_at11/119+21330266..21332247expressed protein
LOC_Os09g36982Os.51421.1.S1_at10/119+21332768..21334610expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0006833biological_processwater transport
GO:0009651biological_processresponse to salt stress
GO:0005886cellular_componentplasma membrane
GO:0016020cellular_componentmembrane
GO:0015250molecular_functionwater channel activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14256.1.S1_a_at--981--4571Chr09:21310620..21310644 (25 bp)
GCGCTCAGCTCGTTCAGGAGCACCA
LOC_Os09g36930
Os.14256.1.S1_a_at--668--1391Chr09:21310662..21310686 (25 bp)
AGACGACGATGTTCATTTGATACGA
LOC_Os09g36930
Os.14256.1.S1_a_at--1143--10771Chr09:21310678..21310702 (25 bp)
TTGATACGAGAGATCGATCAGCTGC
LOC_Os09g36930
Os.14256.1.S1_a_at--407--4771Chr09:21310698..21310722 (25 bp)
GCTGCTTGATTAATTGTTCTTGATT
LOC_Os09g36930
Os.14256.1.S1_a_at--539--9531Chr09:21310741..21310765 (25 bp)
TCTACGACTATGGACGATCATGCAT
LOC_Os09g36930
Os.14256.1.S1_a_at--629--8851Chr09:21310772..21310796 (25 bp)
TGATCGATGCATGCGTCTGTTGTCA
LOC_Os09g36930
Os.14256.1.S1_a_at--299--4991Chr09:21310780..21310804 (25 bp)
GCATGCGTCTGTTGTCAGTTTTATT
LOC_Os09g36930
Os.14256.1.S1_a_at--600--7111Chr09:21310793..21310817 (25 bp)
GTCAGTTTTATTTGGGACTTTCAGT
LOC_Os09g36930
Os.14256.1.S1_a_at--312--6911Chr09:21310860..21310884 (25 bp)
GTATCTGTATGCATGCACGGCACGG
LOC_Os09g36930
Os.14256.1.S1_a_at--1162--5091Chr09:21310874..21310898 (25 bp)
GCACGGCACGGTACGCGTGTTTATG
LOC_Os09g36930
Os.14256.1.S1_a_at--80--6811Chr09:21310892..21310916 (25 bp)
GTTTATGGATGATGCTTTGTTACGT
LOC_Os09g36930
Target Sequence 
GCGCTCAGCTCGTTCAGGAGCACCAGCGTGACGGCGTGAGGAAGACGACGATGTTCATTTGATACGAGAGATCGATCAGC
TGCTTGATTAATTGTTCTTGATTTCGTTGTTCAATTTACAATCTACGACTATGGACGATCATGCATATGATATGATCGAT
GCATGCGTCTGTTGTCAGTTTTATTTGGGACTTTCAGTGTGAGAGTGTGAATGGTTGTAAAATAAGTGGAGTGNCCTGTA
TGTATCTGTATGCATGCACGGCACGGTACGCGTGTTTATGGATGATGCTTTGTTACGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14256.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis