Browse Element(s) Details


OsAffx.18017.1.S1_at

Description tigr:9637.m03120
TID=OsAffx.18017.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3691011/11bZIP transcription factor family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g36870OsAffx.6498.1.S1_at11/119+21265843..21267261hypothetical protein
LOC_Os09g36880Os.14530.2.S1_x_at11/119+21270171..21272107GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os09g36880Os.14530.1.S1_at11/119+21270171..21272107GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os09g36880Os.32889.2.S1_at1/119+21270171..21272107GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os09g36890Os.8267.1.S1_at11/119+21274239..21275819hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os09g36900Os.49552.1.S1_at11/119+21275966..21280110WD-40 repeat protein MSI1, putative, expressed
LOC_Os09g36900OsAffx.28269.1.S1_x_at1/119+21275966..21280110WD-40 repeat protein MSI1, putative, expressed
LOC_Os09g36910OsAffx.18017.1.S1_at11/119+21291520..21293660bZIP transcription factor family protein, expressed
LOC_Os09g36920OsAffx.18018.1.S1_s_at11/119+21299441..21303732La domain containing protein, expressed
LOC_Os09g36930Os.14256.1.S1_a_at11/119+21309651..21311060aquaporin PIP2.8, putative, expressed
LOC_Os09g36940OsAffx.18019.1.S1_at11/119+21312642..21313340Plastocyanin-like domain containing protein, expressed
LOC_Os09g36950OsAffx.18020.1.S1_at11/119+21315300..21315704hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18017.1.S1_at--255--1531Chr09:21292093..21292117 (25 bp)
AGCAGGCCCGCGTCAACAACCTGGA
LOC_Os09g36910
OsAffx.18017.1.S1_at--977--4211Chr09:21292100..21292124 (25 bp)
CCGCGTCAACAACCTGGAGACCGAG
LOC_Os09g36910
OsAffx.18017.1.S1_at--673--10351Chr09:21293524..21293548 (25 bp)
TTTTTCTCTGTCCTGCTCCACAGGG
LOC_Os09g36910
OsAffx.18017.1.S1_at--860--4391Chr09:21293548..21293572 (25 bp)
GCCACAGCGGCCAGTGGCTTGAAAA
LOC_Os09g36910
OsAffx.18017.1.S1_at--328--8291Chr09:21293563..21293587 (25 bp)
GGCTTGAAAAGCCTTCATTGGCCAG
LOC_Os09g36910
OsAffx.18017.1.S1_at--385--3611Chr09:21293578..21293602 (25 bp)
CATTGGCCAGATTCTCTCAGATGTC
LOC_Os09g36910
OsAffx.18017.1.S1_at--1122--8431Chr09:21293582..21293606 (25 bp)
GGCCAGATTCTCTCAGATGTCTATC
LOC_Os09g36910
OsAffx.18017.1.S1_at--726--6571Chr09:21293587..21293611 (25 bp)
GATTCTCTCAGATGTCTATCTTTGT
LOC_Os09g36910
OsAffx.18017.1.S1_at--678--1291Chr09:21293596..21293620 (25 bp)
AGATGTCTATCTTTGTAAGCCCTAG
LOC_Os09g36910
OsAffx.18017.1.S1_at--551--7151Chr09:21293600..21293624 (25 bp)
GTCTATCTTTGTAAGCCCTAGATCA
LOC_Os09g36910
OsAffx.18017.1.S1_at--170--3691Chr09:21293606..21293630 (25 bp)
CTTTGTAAGCCCTAGATCAGGATAT
LOC_Os09g36910
Target Sequence 
AGCAGGCCCGCGTCAACAACCTGGAGACCGAGGTGGAGCAGCTCAAGCAGGAGAACAAGATGCTCCGCGTCAAGTACGAG
CAGCTAAACCACCGGTTTTTCTCTGTCCTGCTCCACAGGGCCACAGCGGCCAGTGGCTTGAAAAGCCTTCATTGGCCAGA
TTCTCTCAGATGTCTATCTTTGTAAGCCCTAGATCAGGATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18017.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis