Browse Element(s) Details


Os.8267.1.S1_at

Description gb:AK120729.1
DB_XREF= gi:37990352
TID=Os.8267.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.8267 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023003B04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023003B04, full insert sequence.
FL= gb:AK120729.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3689011/11hydroxyproline-rich glycoprotein family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g36850OsAffx.6497.1.S1_s_at11/119+21251392..21252385expressed protein
LOC_Os09g36860Os.10735.1.S1_at11/119+21253796..21256372Acyl carrier protein II, chloroplast precursor, putative, expressed
LOC_Os09g36870OsAffx.6498.1.S1_at11/119+21265843..21267261hypothetical protein
LOC_Os09g36880Os.14530.2.S1_x_at11/119+21270171..21272107GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os09g36880Os.14530.1.S1_at11/119+21270171..21272107GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os09g36880Os.32889.2.S1_at1/119+21270171..21272107GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os09g36890Os.8267.1.S1_at11/119+21274239..21275819hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os09g36900Os.49552.1.S1_at11/119+21275966..21280110WD-40 repeat protein MSI1, putative, expressed
LOC_Os09g36900OsAffx.28269.1.S1_x_at1/119+21275966..21280110WD-40 repeat protein MSI1, putative, expressed
LOC_Os09g36910OsAffx.18017.1.S1_at11/119+21291520..21293660bZIP transcription factor family protein, expressed
LOC_Os09g36920OsAffx.18018.1.S1_s_at11/119+21299441..21303732La domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8267.1.S1_at--1097--5851Chr09:21274690..21274714 (25 bp)
GAGCCACGGGCCAGTGTGCAACAGA
LOC_Os09g36890
Os.8267.1.S1_at--279--2491Chr09:21274671..21274695 (25 bp)
AACAGATGCCGGTTGTGGTGCCAGC
LOC_Os09g36890
Os.8267.1.S1_at--553--9171Chr09:21274641..21274665 (25 bp)
TGCCGAAGGCACAAGAACCGATACA
LOC_Os09g36890
Os.8267.1.S1_at--1136--2111Chr09:21274619..21274643 (25 bp)
ACAGGTTCGGCATGTTGATCTTGAC
LOC_Os09g36890
Os.8267.1.S1_at--584--2131Chr09:21274566..21274590 (25 bp)
ACAGTAGCGACGTCGGGAGCTCTGA
LOC_Os09g36890
Os.8267.1.S1_at--35--7931Chr09:21274529..21274553 (25 bp)
GGATTAGTTCCTTGGTAAGCTATTT
LOC_Os09g36890
Os.8267.1.S1_at--338--731Chr09:21274503..21274527 (25 bp)
ATGATTCATGTTTCCATGCCGTTGT
LOC_Os09g36890
Os.8267.1.S1_at--903--591Chr09:21274488..21274512 (25 bp)
ATGCCGTTGTAGGTCATGTACTAGT
LOC_Os09g36890
Os.8267.1.S1_at--249--9771Chr09:21274454..21274478 (25 bp)
TAATGCAAGCTCTCATACATGATTA
LOC_Os09g36890
Os.8267.1.S1_at--351--6431Chr09:21274424..21274448 (25 bp)
GATCATGCAGCAATATACTGGTATT
LOC_Os09g36890
Os.8267.1.S1_at--298--4331Chr09:21274355..21274379 (25 bp)
CCATCTCACTAGTCAATTTGCTTCG
LOC_Os09g36890
Target Sequence 
GAGCCACGGGCCAGTGTGCAACAGATGCCGGTTGTGGTGCCAGCAATGGTGCCGAAGGCACAAGAACCGATACAGGTTCG
GCATGTTGATCTTGACATTAACAATAGTTCTAGCAGTGATGAGTACAGTAGCGACGTCGGGAGCTCTGAAGAAGATGATG
AGGATTAGTTCCTTGGTAAGCTATTTTATGATTCATGTTTCCATGCCGTTGTAGGTCATGTACTAGTAAGAACAAATAAT
GCAAGCTCTCATACATGATTATTCAAGATCATGCAGCAATATACTGGTATTGAATAGAATTGGGTGGCGTATCATGTATG
TGTTGATTAATTAAACCATCTCACTAGTCAATTTGCTTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8267.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis